View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4357_low_8 (Length: 283)

Name: NF4357_low_8
Description: NF4357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4357_low_8
NF4357_low_8
[»] chr3 (5 HSPs)
chr3 (18-283)||(53509631-53509893)
chr3 (219-283)||(53513164-53513228)
chr3 (221-283)||(53523824-53523886)
chr3 (69-118)||(2195274-2195323)
chr3 (57-107)||(19758076-19758126)
[»] chr5 (1 HSPs)
chr5 (218-279)||(16609904-16609965)
[»] chr2 (1 HSPs)
chr2 (57-157)||(12734889-12734990)
[»] chr8 (2 HSPs)
chr8 (69-154)||(41031415-41031501)
chr8 (69-154)||(41031521-41031607)
[»] chr7 (1 HSPs)
chr7 (57-152)||(36101774-36101870)
[»] chr6 (1 HSPs)
chr6 (73-109)||(10659834-10659870)
[»] chr4 (1 HSPs)
chr4 (55-107)||(51421917-51421969)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 53509893 - 53509631
Alignment:
Q  18 atttgcattaagaacctccgactcattttgtctccgcaattggatctaaacatggtttatgagagaaaattatgatataatttgatccatataatcgacc 117  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||| ||| |||||||||    
T  53509893 atttgcattatgaacctccaactcattttgtctccgcaattggatctaaacatgatttatgatagaaaattatgacataatttgattcatgtaatcgacc 53509794  T
Q  118 ccggatagtggaataaagtttggttgtgttgttgttgttgaatgtgatctctatctccacctttccctcaaaaatttataagtatggactttatgtacaa 217  Q
    ||| |||||||||||||| |||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53509793 ccgaatagtggaataaagcttggttgtgttgttgttgt---atgtgatctctatctccacctttccctcaaaaatttataagtatggactttatgtacaa 53509697  T
Q  218 attatagccatgtgattcaaacctatattacattccacattggaaatttgaagatatgaatgatga 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53509696 attatagccatgtgattcaaacctatattacattccacattggaaatttgaagatatgaatgatga 53509631  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 53513228 - 53513164
Alignment:
Q  219 ttatagccatgtgattcaaacctatattacattccacattggaaatttgaagatatgaatgatga 283  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||    
T  53513228 ttatagccatgtgattcaaacttatattacatttcacattggaaatttcaagctatgaatgatga 53513164  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 221 - 283
Target Start/End: Complemental strand, 53523886 - 53523824
Alignment:
Q  221 atagccatgtgattcaaacctatattacattccacattggaaatttgaagatatgaatgatga 283  Q
    ||||||||||||||||||| |||||||||||| || || |||||| |||| ||||||||||||    
T  53523886 atagccatgtgattcaaacttatattacattctactttagaaattagaagctatgaatgatga 53523824  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 2195274 - 2195323
Alignment:
Q  69 atggtttatgagagaaaattatgatataatttgatccatataatcgaccc 118  Q
    ||||||||||| |||| |||||||| ||||||||| ||||||||||||||    
T  2195274 atggtttatgatagaacattatgatgtaatttgattcatataatcgaccc 2195323  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 19758076 - 19758126
Alignment:
Q  57 ttggatctaaacatggtttatgagagaaaattatgatataatttgatccat 107  Q
    |||||||| || ||||||||||| |||| |||||| |||||||||||||||    
T  19758076 ttggatctcaatatggtttatgatagaacattatggtataatttgatccat 19758126  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 279
Target Start/End: Original strand, 16609904 - 16609965
Alignment:
Q  218 attatagccatgtgattcaaacctatattacattccacattggaaatttgaagatatgaatg 279  Q
    |||||||||||||||||||||| ||||||||||||||| ||| ||||| |||| | ||||||    
T  16609904 attatagccatgtgattcaaacttatattacattccactttgaaaattagaagctgtgaatg 16609965  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 12734889 - 12734990
Alignment:
Q  57 ttggatctaaacatggtttatgagagaaaattatgatataatttgatccatataatcgaccccggatagtggaataaagtttggttg-tgttgttgttgt 155  Q
    ||||||| ||| ||||||||||| |||| | |||| | ||||||||||||| || ||||||||   |||||| |||| | ||||||| ||||||||||||    
T  12734889 ttggatccaaatatggtttatgatagaacactatggtgtaatttgatccatgtagtcgaccccacttagtgggataaggcttggttgttgttgttgttgt 12734988  T
Q  156 tg 157  Q
    ||    
T  12734989 tg 12734990  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 41031501 - 41031415
Alignment:
Q  69 atggtttatgagagaaaattatgatataatttgatccatataatcgaccccggatagtggaataaagtttggttg-tgttgttgttg 154  Q
    ||||||||| | |||| ||||||| |||||||||||||||||  |||||||   |||||| |||| | ||||||| |||||||||||    
T  41031501 atggtttatcacagaacattatgagataatttgatccatatagccgaccccacttagtgggataaggcttggttgttgttgttgttg 41031415  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 41031607 - 41031521
Alignment:
Q  69 atggtttatgagagaaaattatgatataatttgatccatataatcgaccccggatagtggaataaagtttggttg-tgttgttgttg 154  Q
    ||||||||| | |||| ||||||| |||||||||||||||||  |||||||   |||||| |||| | ||||||| |||||||||||    
T  41031607 atggtttatcacagaacattatgagataatttgatccatatagccgaccccacttagtgggataaggcttggttgttgttgttgttg 41031521  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 152
Target Start/End: Complemental strand, 36101870 - 36101774
Alignment:
Q  57 ttggatctaaacatggtttatgagagaaaattatgatataatttgatccatataatcgaccccggatagtggaataaagtttggttg-tgttgttgt 152  Q
    ||||||| ||| ||||||||||| |||| |||||||  ||||||||||||| || | ||||||   |||||| |||| | ||||||| |||||||||    
T  36101870 ttggatcaaaatatggtttatgatagaacattatgacgtaatttgatccatgtagttgaccccacttagtgggataaggcttggttgttgttgttgt 36101774  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 10659870 - 10659834
Alignment:
Q  73 tttatgagagaaaattatgatataatttgatccatat 109  Q
    |||||||||||| |||||||||| |||||||||||||    
T  10659870 tttatgagagaatattatgatatcatttgatccatat 10659834  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 51421917 - 51421969
Alignment:
Q  55 aattggatctaaacatggtttatgagagaaaattatgatataatttgatccat 107  Q
    ||||||||| ||| ||||||||||| |||| |||||||  |||||||||||||    
T  51421917 aattggatccaaaaatggtttatgatagaacattatgacgtaatttgatccat 51421969  T

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