View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4358-Insertion-1 (Length: 1081)

Name: NF4358-Insertion-1
Description: NF4358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4358-Insertion-1
NF4358-Insertion-1
[»] chr7 (1 HSPs)
chr7 (8-1024)||(48483596-48484614)
[»] chr8 (2 HSPs)
chr8 (572-702)||(10036530-10036660)
chr8 (332-428)||(10036323-10036419)
[»] scaffold0097 (4 HSPs)
scaffold0097 (593-701)||(10156-10264)
scaffold0097 (595-709)||(1176-1289)
scaffold0097 (596-700)||(1371-1475)
scaffold0097 (593-635)||(10391-10433)
[»] chr2 (5 HSPs)
chr2 (593-701)||(20706082-20706190)
chr2 (593-675)||(42559290-42559372)
chr2 (593-675)||(20856991-20857073)
chr2 (593-635)||(20706317-20706359)
chr2 (593-651)||(20857197-20857255)
[»] chr3 (1 HSPs)
chr3 (587-647)||(41529049-41529109)


Alignment Details
Target: chr7 (Bit Score: 952; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 952; E-Value: 0
Query Start/End: Original strand, 8 - 1024
Target Start/End: Complemental strand, 48484614 - 48483596
Alignment:
Q  8 atagtcctgtagtgttgtgtgtaccgtgtcttcatatctccataatacttctgcgcttctttctcatttttgaaataacaaaacaaatttcttcagatca 107  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48484614 atagtcctgcagtgttgtgtgtaccgtgtcttcatatctccataatatttctgcgcttctttctcatttttgaaataacaaaacaaatttcttcagatca 48484515  T
Q  108 cggaacacaatccccaagctggaattcccatgaagttaaatcagaaacaggtgttttcctttttgcaaggtaagcatgcatttcatatgaacttttacat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48484514 cggaacacaatccccaagctggaattcccatgaagttaaatcagaaacaggtgttttcctttttgcaaggtaagcatgcatttcatatgaacttttacat 48484415  T
Q  208 actgaaacttccatttcttgtacatgatcaggtcttatggtgcatttcagtctcatgttctctttcaaatacatttttgaaatggagaaacttagtttac 307  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48484414 actgaaacttccatttcttgtacatgatcaggtcttatggtacatttcagtcttatgttctctttcaaatacatttttgaaatggagaaacttagtttac 48484315  T
Q  308 ttttactttattgcctcagaaaaatatgaaccagtttatgcaaaatggacaacagagagatgtgcgatttgcagatgggtagaagattgggaagataaca 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48484314 ttttactttattgcctcagaaaaatatgaaccagtttatgcaaaatggacaacagagagatgtgcgatttgcagatgggtagaagattgggaagataaca 48484215  T
Q  408 agattattatatgtaacaggtgctataatcatcgt-catgatttccatccccaagttgtaaagttattacagatattttgaaattctctttctgatttac 506  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48484214 agattattatatgtaacaggtgctataatcatcgttcatgatttccatccccaagttgtaaagttattacagatattttgaaattctctttctgatttac 48484115  T
Q  507 aaaactttaaaggatcaaaaatgaattacttcacgtgcatcaagagtgctaagttgcagttcatttgcagatgccaagttgctgttcaccaagagtgcta 606  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48484114 aaaactttaaaggatcaaacgtgaattacttcacgtgcatcaagagtgctaagttgcagttcatttgcagatgccaagttgctgttcaccaagagtgcta 48484015  T
Q  607 tggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttgaaagtgagtgctgcctctgtccagtaaaaggcatg 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48484014 tggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttgaaagagagtgctgcctctgtccagtaaaaggcatg 48483915  T
Q  707 tcatctacatttaatcttttctttggtctgactgtttttgctgtattattacattatatcaaattcttcaggaagtagtaacttatggatccaccgcaat 806  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48483914 tcatctacatttaatcttttctttggtctgactgtttttgctgtattattacattatatcaaattcttcaggaagtagtaacttatggatccaccgcaat 48483815  T
Q  807 aattcttcagtgagaaatatgcaattttccattcatatcatgattggcttgactcaatcacgtactaaccaatctatgcatgtaatcaatttagctcact 906  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48483814 aattcttcagtgagaaatatgcaattttccattcatatcatgattggcttgactcgatcacgtactaaccaatctatgcatgtaatcaatttagctcact 48483715  T
Q  907 ttcatag-tatggagaacttcacccgtatgcctcatacaaatatgttttgggatatcttgacgagctttttgaaagcttatttgtgattattttataaca 1005  Q
    ||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48483714 ttcatagttatggagaa-ttcacctgtatgcctcatacaaatatgttttgggatatcttgacgagctttttgaaagcttatttgtgattattttataaca 48483616  T
Q  1006 t-agaacttatagtcgtgtt 1024  Q
    | ||||||||||||||||||    
T  48483615 taagaacttatagtcgtgtt 48483596  T

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Target: chr8 (Bit Score: 59; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 572 - 702
Target Start/End: Original strand, 10036530 - 10036660
Alignment:
Q  572 tgcagatgccaagttgctgttcaccaagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttg 671  Q
    |||||||||||| | || || ||||| || ||||||||||||||| |||| || ||||||||||| ||||| || ||||| || ||||| || |||||||    
T  10036530 tgcagatgccaaatagcagtccaccaggaatgctatggtgcaaagcatgtccaggattttacttcttgggtatgcagagtatgcgaaacccctgatgttg 10036629  T
Q  672 aaagtgagtgctgcctctgtccagtaaaagg 702  Q
    |||| ||||||||||| ||||||||||||||    
T  10036630 aaagagagtgctgcctttgtccagtaaaagg 10036660  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 332 - 428
Target Start/End: Original strand, 10036323 - 10036419
Alignment:
Q  332 tatgaaccagtttatgcaaaatggacaacagagagatgtgcgatttgcagatgggtagaagattgggaagataacaagattattatatgtaacaggt 428  Q
    ||||| |||||| ||||||||||||| ||||| |||||||| ||||| |||||| | ||||| |  || |||||||| ||||| || || |||||||    
T  10036323 tatgagccagttcatgcaaaatggacgacagaaagatgtgctatttgtagatggatcgaagactatgaggataacaaaattatcatctgcaacaggt 10036419  T

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Target: scaffold0097 (Bit Score: 57; Significance: 3e-23; HSPs: 4)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 593 - 701
Target Start/End: Original strand, 10156 - 10264
Alignment:
Q  593 caccaagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttgaaagtgagtgctgcctctgtc 692  Q
    |||||||| |||||||||||| || ||||||| ||||||||||  ||||||| |||||| || |||||||| ||||||||||| ||||| ||||| ||||    
T  10156 caccaagaatgctatggtgcagagcatgttcaggattttacttattgggtttctagagtatgcgaaactcctgatgttgaaagagagtgttgcctttgtc 10255  T
Q  693 cagtaaaag 701  Q
    |||||||||    
T  10256 cagtaaaag 10264  T

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Target: scaffold0097; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 595 - 709
Target Start/End: Original strand, 1176 - 1289
Alignment:
Q  595 ccaagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttgaaagtgagtgctgcctctgtcca 694  Q
    |||||| |||||||||||| || ||||||| ||||||||||| ||| ||  |||||| || |||||||| ||||||||||| ||||| ||||| ||| ||    
T  1176 ccaagaatgctatggtgcagagcatgttcatgattttacttcttggattc-tagagtatgcgaaactcctgatgttgaaagagagtgttgcctttgtaca 1274  T
Q  695 gtaaaaggcatgtca 709  Q
    |||||||||| ||||    
T  1275 gtaaaaggcacgtca 1289  T

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Target: scaffold0097; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 596 - 700
Target Start/End: Complemental strand, 1475 - 1371
Alignment:
Q  596 caagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttgaaagtgagtgctgcctctgtccag 695  Q
    ||||| ||||||||||||||  ||||||||||||||||||| || |||| |||||| |  |||||| |  |||||||||| || || | ||| |||||||    
T  1475 caagaatgctatggtgcaaaatatgttcaagattttacttcttgagtttttagagtattcgaaacttctaatgttgaaagagattgtttcctttgtccag 1376  T
Q  696 taaaa 700  Q
    |||||    
T  1375 taaaa 1371  T

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Target: scaffold0097; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 593 - 635
Target Start/End: Complemental strand, 10433 - 10391
Alignment:
Q  593 caccaagagtgctatggtgcaaagaatgttcaagattttactt 635  Q
    |||||||| | ||||||||||||| ||||||||||||||||||    
T  10433 caccaagaatactatggtgcaaagcatgttcaagattttactt 10391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 3e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 593 - 701
Target Start/End: Original strand, 20706082 - 20706190
Alignment:
Q  593 caccaagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttgaaagtgagtgctgcctctgtc 692  Q
    |||||||| |||||||||||| || ||||||| ||||||||||  ||||||| |||||| || |||||||| ||||||||||| ||||| ||||| ||||    
T  20706082 caccaagaatgctatggtgcagagcatgttcaggattttacttattgggtttctagagtatgcgaaactcctgatgttgaaagagagtgttgcctttgtc 20706181  T
Q  693 cagtaaaag 701  Q
    |||||||||    
T  20706182 cagtaaaag 20706190  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 593 - 675
Target Start/End: Complemental strand, 42559372 - 42559290
Alignment:
Q  593 caccaagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttgaaag 675  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||| | |||||||||||  | ||||||||| |||||||||||    
T  42559372 caccaagaatgctatggtgcaaagcatgttcaggattttacttcttaggtttgtagagcatttgaaactcctgatgttgaaag 42559290  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 593 - 675
Target Start/End: Original strand, 20856991 - 20857073
Alignment:
Q  593 caccaagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttgaaag 675  Q
    |||||||| |||||||||||| || ||||||  ||||||||||| ||||||| |||||| || |||||||   ||||||||||    
T  20856991 caccaagaatgctatggtgcagagcatgttctggattttacttcttgggtttctagagtatgcgaaactcttaatgttgaaag 20857073  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 593 - 635
Target Start/End: Complemental strand, 20706359 - 20706317
Alignment:
Q  593 caccaagagtgctatggtgcaaagaatgttcaagattttactt 635  Q
    |||||||| | ||||||||||||| ||||||||||||||||||    
T  20706359 caccaagaatactatggtgcaaagcatgttcaagattttactt 20706317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 593 - 651
Target Start/End: Complemental strand, 20857255 - 20857197
Alignment:
Q  593 caccaagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagt 651  Q
    |||||||| || |||||||||||| ||| ||||||||||||||| || |||| ||||||    
T  20857255 caccaagaatgttatggtgcaaagcatggtcaagattttacttcttgagtttttagagt 20857197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 587 - 647
Target Start/End: Complemental strand, 41529109 - 41529049
Alignment:
Q  587 gctgttcaccaagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgta 647  Q
    |||||||||||||| |||||||| ||||| ||||||| ||| ||||| |||||||| ||||    
T  41529109 gctgttcaccaagaatgctatggagcaaaaaatgttcgagactttacatcctgggtctgta 41529049  T

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