View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4358-Insertion-2 (Length: 924)
Name: NF4358-Insertion-2
Description: NF4358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4358-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 624; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 8 - 643
Target Start/End: Original strand, 35747872 - 35748507
Alignment:
| Q |
8 |
gaaaacggtgataaagtgaagggttcatggagtaaaactgaagatgaaacgttggtgaaactggtaaaggaaaacggtgcaagaaactggtcggtgataa |
107 |
Q |
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| T |
35747872 |
gaaaacggtgataaagtgaagggttcatggagtaaaactgaagatgaaacgttggtgaaactggtaaaggaaaacggtgcaagaaactggtcggtgataa |
35747971 |
T |
|
| Q |
108 |
gcaacgaaatccccggtcgttcaggaaaatcatgccgtctacggtggtgtaatcagctgagtccaaccgttcaacaccttccttttacaccggcggagga |
207 |
Q |
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| T |
35747972 |
gcaacgaaatccccggtcgttcaggaaaatcatgccgtctacggtggtgtaatcagctgagtccaaccgttcaacaccttccttttacaccggcggagga |
35748071 |
T |
|
| Q |
208 |
tagcatcatcattgaagcacatgcagttcatggaaacaaatgggcgacgatttctcgtcttcttccaggtagaaccgataacgccataaaaaatcactgg |
307 |
Q |
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| T |
35748072 |
tagcatcatcattgaagcacatgcagttcatggaaacaaatgggcgacgatttctcgtcttcttccaggtagaaccgataacgcgataaaaaatcactgg |
35748171 |
T |
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| Q |
308 |
aattcaactctccgtcgtcgtcgcacagcggctcctgcagcggttccaccggttacaacgattgttcaaagggttccaacggcggtgccggtgacggtga |
407 |
Q |
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| T |
35748172 |
aattcaactctccgtcgtcgtcgcacggcggctcctgcagcggttccaccggttacaacgattgttcaaagggttccaacggcggtgccggtgacggtga |
35748271 |
T |
|
| Q |
408 |
ttcccaccggtgtgatgatcggaaaacgtgtaaatgaaagttacgacggtgattattataaggatttgttgggtctcggtacccgttataaacgtccttg |
507 |
Q |
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| T |
35748272 |
ttcccaccggtgtgatgatcggaaaacgtgtaaatgaaagttacgacggtgattattataaggatttgttgagtctcggtacccgttataaacgtccttg |
35748371 |
T |
|
| Q |
508 |
tgttttggtcgagaataatagcgggtcacgtggctcacgtgagggtgaagaaacggtaacggaagatgatgacgcagggaataaaggtgttaacgtggtt |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35748372 |
tgttttggtcgagaataatagcgggtcacgtggctcacgtgagggtgaagaaacggtaacggaagatgatgacgcagggaataaaggtgttaacgtggtt |
35748471 |
T |
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| Q |
608 |
aggacgtcgttaagtttgtttccacctggttttctg |
643 |
Q |
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| T |
35748472 |
aggacgtcgttaagtttgtttccacctggttttctg |
35748507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 733 - 924
Target Start/End: Original strand, 35748591 - 35748785
Alignment:
| Q |
733 |
tgagaaattgaggtcgatgcttcagcgcatgatagcagaggaagttaggaattatgttgataagatacgccttggtggtgggttagctcctgattcaaca |
832 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35748591 |
tgagaaattgaggtcgatgcttcagcgcatgatagcagaggaagttaggaattatgttgataagatgcgccttggtggtgggttagctcctgattcaaca |
35748690 |
T |
|
| Q |
833 |
cttcgaaagtgaaaaaatttcaatatatannnnnnnnnaattcttctttttcatccttc-tattt--gtttaacatgacaag-ttttagttttata |
924 |
Q |
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| T |
35748691 |
cttcgaaagtgaaaaaatttcaatatata-tattttttaattcttctttttcatccttcttattttgttttaacatgacaagtttttagttttata |
35748785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 46599340 - 46599285
Alignment:
| Q |
122 |
ggtcgttcaggaaaatcatgccgtctacggtggtgtaatcagctgagtccaaccgt |
177 |
Q |
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|||||||| || || ||||| ||||| ||||||||||||||||||||||| ||||| |
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| T |
46599340 |
ggtcgttccggcaagtcatgtcgtctccggtggtgtaatcagctgagtcccaccgt |
46599285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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