View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4358-Insertion-5 (Length: 291)
Name: NF4358-Insertion-5
Description: NF4358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4358-Insertion-5 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 1104212 - 1103929
Alignment:
| Q |
8 |
cttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttgtttcgacaatttgagtaacagtcaccgcgggtgctccactaaat |
107 |
Q |
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| T |
1104212 |
cttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaattttgtttcgacaatttgagtaacagtcaccgcgggtgctccactaaat |
1104113 |
T |
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| Q |
108 |
ccaactccattccaaggaccactcctatgaatctcaactgatccttttttcaatacaatttctggattactacgaaggacaatagcccaagtaaaatctc |
207 |
Q |
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| T |
1104112 |
ccaactccattccaaggaccactcctatgaatctcaactgatccttttttcaatacaatttctggattactacgaaggacaatagcccaagtaaaatctc |
1104013 |
T |
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| Q |
208 |
ccgaagacggatcatcccaatttttccaagaagttaattgacgattaagaccggtttttaggtcccatccaagcttcatgtctg |
291 |
Q |
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| T |
1104012 |
ccgaagacggatcatcccaatttttccatgaagttaattgacgattaagaccggtttttaggtcccatccaagcttcatgtctg |
1103929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 1087659 - 1087373
Alignment:
| Q |
8 |
cttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttgt---ttcgacaatttgagtaacagtcaccgcgggtgctccacta |
104 |
Q |
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| T |
1087659 |
cttgtttacaagactatatatgtaataaacttcatttgaattgttcaccgacgttgtaattacaacaattgaagtaacaatctccacaggtgctccacta |
1087560 |
T |
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| Q |
105 |
aatccaactccattccaaggaccactcctatgaatctcaactgatccttttttcaatacaatttctggattactacgaaggacaatagcccaagtaaaat |
204 |
Q |
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| T |
1087559 |
aatccaactccattccaagggccagttctatgaatctcaactgatccttttttcaatacaacttctggattactactaaggacaataccccaagttaaat |
1087460 |
T |
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| Q |
205 |
ctcccgaagacggatcatcccaatttttccaagaagttaattgacgattaagaccggtttttaggtcccatccaagcttcatgtctg |
291 |
Q |
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| T |
1087459 |
ctcccgaagatggatcgtcccaacttttccatgaagttaattgacgattaagaccggtttttaggtcccatccaagcttcatgtctg |
1087373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 1047185 - 1046899
Alignment:
| Q |
8 |
cttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttgtttcgaca--atttga-gtaacagtcaccgcgggtgctccacta |
104 |
Q |
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| T |
1047185 |
cttgtttacaagactatatgagtaataaacctcatttgaattgttcacagatcttgcaacaacaacagttgatgtaacaatctccataggcgctccacta |
1047086 |
T |
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| Q |
105 |
aatccaactccattccaaggaccactcctatgaatctcaactgatccttttttcaatacaatttctggattactacgaaggacaatagcccaagtaaaat |
204 |
Q |
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| T |
1047085 |
aatccaactccattccaaggaccactcctatgaatttcaactgatcctcttttcaaaacaatttctggattactacgaaggacaataccccaagttaaat |
1046986 |
T |
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| Q |
205 |
ctcccgaagacggatcatcccaatttttccaagaagttaattgacgattaagaccggtttttaggtcccatccaagcttcatgtctg |
291 |
Q |
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| T |
1046985 |
ctcccgaagatggatcgtcccaatttttccaagaagttaatggacgattaagaccaatttttaggtcccatccaagcttcatgtctg |
1046899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 93 - 287
Target Start/End: Complemental strand, 1071910 - 1071716
Alignment:
| Q |
93 |
ggtgctccactaaatccaactccattccaaggaccactcctatgaatctcaactgatccttttttcaatacaatttctggattactacgaaggacaatag |
192 |
Q |
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| T |
1071910 |
ggtgctccactaaatccaactccattccaaggaccactcctgtgaatttcaactgatccttttttcaatacaatttctggattactatgaaggacaatac |
1071811 |
T |
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| Q |
193 |
cccaagtaaaatctcccgaagacggatcatcccaatttttccaagaagttaattgacgattaagaccggtttttaggtcccatccaagcttcatg |
287 |
Q |
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| T |
1071810 |
cccatgttaaatctcccgatgatggatcgtcccaatttttccaagaagttaattgacgattaagaccggtttttaagtcccatccatgcttcatg |
1071716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 1071998 - 1071950
Alignment:
| Q |
8 |
cttgtttacaagactatatgtgtagtaaacttcatttgtattgttcaca |
56 |
Q |
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| T |
1071998 |
cttgtttacaagactatatgtgaaataaacttcatttgaattgatcaca |
1071950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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