View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4358-Insertion-6 (Length: 211)
Name: NF4358-Insertion-6
Description: NF4358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4358-Insertion-6 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 1922155 - 1921948
Alignment:
| Q |
12 |
gtacatgtggtgtttataaacaaagttttatagcatcaaattcaaattatattgtccatcaacatgaccataaaatctaaaccttgaccatcattattcg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||| |
|
|
| T |
1922155 |
gtacatgtggtgtttataaacaaagttttatagcatcaaattcaaattatattgtccatcaacatgaccatcaaaactaaaccttgactatcattattcg |
1922056 |
T |
|
| Q |
112 |
actaaatttgtgt--------gtatagtgtaaaaatgtgatagtggtcttgtgtacacgggtgtcccatattttggcatcactttcacggtctttcctaa |
203 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1922055 |
actaaatttgtgtgtatctatgtatagtgtaaaaatgtgataggggtcttgtgtacacgggtgtcccatattttggcatcactttcacggtctatcctaa |
1921956 |
T |
|
| Q |
204 |
tccctccc |
211 |
Q |
| |
|
|||||||| |
|
|
| T |
1921955 |
tccctccc |
1921948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University