View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4358_low_3 (Length: 281)

Name: NF4358_low_3
Description: NF4358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4358_low_3
NF4358_low_3
[»] chr3 (11 HSPs)
chr3 (19-270)||(20994819-20995070)
chr3 (19-270)||(20981660-20981911)
chr3 (47-244)||(20977464-20977664)
chr3 (32-213)||(20949465-20949649)
chr3 (65-208)||(20948807-20948953)
chr3 (51-124)||(45856786-45856859)
chr3 (19-146)||(45870364-45870491)
chr3 (51-140)||(2996370-2996459)
chr3 (63-124)||(45881814-45881875)
chr3 (168-211)||(45856699-45856742)
chr3 (95-140)||(45914200-45914245)
[»] chr4 (1 HSPs)
chr4 (19-209)||(3978179-3978369)
[»] chr7 (2 HSPs)
chr7 (60-124)||(44501347-44501411)
chr7 (174-274)||(44501197-44501297)
[»] chr5 (1 HSPs)
chr5 (174-218)||(7976615-7976659)


Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 20995070 - 20994819
Alignment:
Q  19 aacgtcttcctgctcttacattgcataatagagactttcgtactttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20995070 aacgtcttcctgctcttacattgcataatagagactttcgtactttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctat 20994971  T
Q  119 ctcacttcagtctcttgattttcagcgtcataatggccgctttgtgcctcaacttaaaaagattgtgaattacgctatttcacacaatgtccagcagtta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20994970 ctcacttcagtctcttgattttcagcgtcataatggccgctttgagcctcaacttaaaaagattgtgaattacgctatttcacacaatgtccagcagtta 20994871  T
Q  219 caactttgtgtcacttgtgacattgcgcaaattcctcctagcttattttcat 270  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  20994870 caactttgtgtcacttgtgacattgcgcaaattcctcatagcttattttcat 20994819  T

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Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 20981911 - 20981660
Alignment:
Q  19 aacgtcttcctgctcttacattgcataatagagactttcgtactttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctat 118  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20981911 aacgtcttcctgctcttacattgcataatagagactttcgtaatttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctat 20981812  T
Q  119 ctcacttcagtctcttgattttcagcgtcataatggccgctttgtgcctcaacttaaaaagattgtgaattacgctatttcacacaatgtccagcagtta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20981811 ctcacttcagtctcttgattttcagcgtcataatggccgctttgagcctcaacttaaaaagattgtgaattacgctatttcacacaatgtccagcggtta 20981712  T
Q  219 caactttgtgtcacttgtgacattgcgcaaattcctcctagcttattttcat 270  Q
    ||||||||||||| ||||||||||||||||||||||| |||| |||||||||    
T  20981711 caactttgtgtcaattgtgacattgcgcaaattcctcatagcctattttcat 20981660  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 47 - 244
Target Start/End: Original strand, 20977464 - 20977664
Alignment:
Q  47 tagagactttcgtactttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcacttcagtctcttgattttcagcgt 146  Q
    |||||||||| | |||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| ||| || |  || ||||||||||| ||||     
T  20977464 tagagactttagaacttacaagatattcaccaaattcgtgtctaagattttatctcttcgcgattcctccatcacattagaggctcttgattttaagcgc 20977563  T
Q  147 cataatggccgctttgtgcctca---acttaaaaagattgtgaattacgctatttcacacaatgtccagcagttacaactttgtgtcacttgtgacattg 243  Q
    |||| ||| | ||| | ||||||   |||| ||| |||||||||||||||||||  ||||||||||||||  |||| ||||  ||||||| |||||||||    
T  20977564 catattggtcccttagagcctcacatacttgaaaggattgtgaattacgctattaaacacaatgtccagcgattacgacttaatgtcactagtgacattg 20977663  T
Q  244 c 244  Q
    |    
T  20977664 c 20977664  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 20949465 - 20949649
Alignment:
Q  32 tcttacattgcataatagagactttcgtactttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcacttcagtct 131  Q
    ||||| |||||||  |||||||||| | |||| |||||||||||||| |||||||||||| |||||||||||| |||||||||||||| || |  |  ||    
T  20949465 tcttaaattgcattgtagagactttagaacttacaagatattcaccaaattcgtgtctaaaattttatctctttgtgattcctctatcacattataagct 20949564  T
Q  132 cttgattttcagcgtcataatggccgctttgtgcctca---acttaaaaagattgtgaattacgctatttcacacaatgtccagc 213  Q
    ||||||||| ||| ||||| ||| || || | ||||||   ||| |||| |||||||||||||||||||  ||||||||||||||    
T  20949565 cttgattttaagcatcatattggtcgtttagagcctcacatactcaaaaggattgtgaattacgctattaaacacaatgtccagc 20949649  T

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Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 65 - 208
Target Start/End: Original strand, 20948807 - 20948953
Alignment:
Q  65 caagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcacttcagtctcttgattttcagcgtcataatggccgctttgtg 164  Q
    ||||||||||||||  || ||||||||||||||||||||||||||| |||||||| || | ||  ||||||||||| ||||||||| ||  ||||| | |    
T  20948807 caagatattcaccaagtttgtgtctaagattttatctcttcgtgatccctctatcgcaatacacactcttgattttaagcgtcatattgttcgcttagag 20948906  T
Q  165 cctca---acttaaaaagattgtgaattacgctatttcacacaatgt 208  Q
    |||||   |||||||| |||||||||||||| ||||  |||||||||    
T  20948907 cctcacatacttaaaaggattgtgaattacggtattaaacacaatgt 20948953  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 45856859 - 45856786
Alignment:
Q  51 gactttcgtactttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcact 124  Q
    |||||||| |||||||||||||||||||  || ||||||||| |||||||||||||||||||||||||| ||||    
T  45856859 gactttcgaactttcaagatattcaccaactttgtgtctaaggttttatctcttcgtgattcctctatcgcact 45856786  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 45870491 - 45870364
Alignment:
Q  19 aacgtcttcctgctcttacattgcataatagagactttcgtactttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctat 118  Q
    ||||||||||| |||||| |||||||  |   |||||||| ||||  ||||||||||||| ||| || |||| | |||||||||| || |||||||||||    
T  45870491 aacgtcttccttctcttatattgcattctgatgactttcgaacttataagatattcaccagatttgtttctagggttttatctctccgggattcctctat 45870392  T
Q  119 ctcacttcagtctcttgattttcagcgt 146  Q
    |||||| |||   ||||||||| |||||    
T  45870391 ctcactgcagaaacttgattttaagcgt 45870364  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 2996459 - 2996370
Alignment:
Q  51 gactttcgtactttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcacttcagtctcttgatttt 140  Q
    |||||||| |||| ||||| |||||||| ||| ||||||||| ||||||||||| | ||||||||||| ||| | ||| |||| ||||||    
T  2996459 gactttcgaacttacaagaaattcaccaaatttgtgtctaaggttttatctctttgcgattcctctatttcattgcagactctcgatttt 2996370  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 45881875 - 45881814
Alignment:
Q  63 ttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcact 124  Q
    |||||||||||||||| ||| ||||| ||| ||||||||||  |||||||||||||| ||||    
T  45881875 ttcaagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcacact 45881814  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 45856742 - 45856699
Alignment:
Q  168 caacttaaaaagattgtgaattacgctatttcacacaatgtcca 211  Q
    ||||| |||||| |||||||||| ||||||||||||||||||||    
T  45856742 caactcaaaaaggttgtgaattatgctatttcacacaatgtcca 45856699  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 45914245 - 45914200
Alignment:
Q  95 tttatctcttcgtgattcctctatctcacttcagtctcttgatttt 140  Q
    |||||||||||||||||||||||| || || ||| |||||||||||    
T  45914245 tttatctcttcgtgattcctctatatcgctgcaggctcttgatttt 45914200  T

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Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 3978179 - 3978369
Alignment:
Q  19 aacgtcttcctgctcttacattgcataatagagactttcgtactttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctat 118  Q
    ||||||||||| ||||||||||||||  |  ||||||| |  ||| ||||| |||||||| ||| ||||||||  |||||| |||||| |||||||||||    
T  3978179 aacgtcttcctactcttacattgcattcttcagactttggagcttacaagaaattcaccagattagtgtctaaagttttatttcttcgcgattcctctat 3978278  T
Q  119 ctcacttcagtctcttgattttcagcgtcataatggccgctttgtgcctcaacttaaaaagattgtgaattacgctatttcacacaatgtc 209  Q
    | |||| ||  ||||||||||| |||||  ||| || ||||||| |||| ||||  |||||||||||||||| ||| ||||||||||||||    
T  3978279 cgcactacaagctcttgattttaagcgtagtaacggtcgctttgagcctaaactcgaaaagattgtgaattatgctctttcacacaatgtc 3978369  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 44501411 - 44501347
Alignment:
Q  60 actttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcact 124  Q
    ||||||||||||||||  | ||||||||||||| ||||||||||||  |||||||||||||||||    
T  44501411 actttcaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcact 44501347  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 274
Target Start/End: Complemental strand, 44501297 - 44501197
Alignment:
Q  174 aaaaagattgtgaattacgctatttcacacaatgtccagcagttacaactttgtgtcacttgtgacattgcgcaaattcctcctagcttattttcatctc 273  Q
    |||| |||||||||||  |||||||||||||  ||||||| || |  |||| |||||  |  ||||| ||| |||||||| |||||| ||||||||||||    
T  44501297 aaaaggattgtgaattgtgctatttcacacatagtccagcggtcaggacttagtgtccatgctgacaatgcacaaattccgcctagcatattttcatctc 44501198  T
Q  274 a 274  Q
    |    
T  44501197 a 44501197  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 7976659 - 7976615
Alignment:
Q  174 aaaaagattgtgaattacgctatttcacacaatgtccagcagtta 218  Q
    |||| |||||||||||| |||||||||||||||||||||| ||||    
T  7976659 aaaaggattgtgaattatgctatttcacacaatgtccagcggtta 7976615  T

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