View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4359-Insertion-2 (Length: 844)
Name: NF4359-Insertion-2
Description: NF4359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4359-Insertion-2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 710; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 8 - 816
Target Start/End: Original strand, 45037124 - 45037947
Alignment:
| Q |
8 |
accacaatacaaaatcggttattgtcaacaatgtccagaaaaagtgcattggccaaaggaaatgggtcaacctccttcactttacttcaatgctggcatg |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45037124 |
accacaatacaaaatcggttattgtcaacaatgtccagaaaaagttcattggccaaaggaaatgggtcaacctccttcactttacttcaatgctggcatg |
45037223 |
T |
|
| Q |
108 |
ttcctgtttgagccaagcattgatacttaccacgatcttttgaagacacttaaagttactcctcctactccttttgctgaacaagatttcttgaatatgt |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45037224 |
ttcctgtttgagccaagcattgatacttaccacgatcttttgaagacacttaaagttactcctcctactccttttgctgaacaagatttcttgaatatgt |
45037323 |
T |
|
| Q |
208 |
atttcaaggatatttataagccaatcccattggtttacaatcttgttcttgctatgttatggcgtcatcctgaaaatgttgagcttcataaagtcaaggt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45037324 |
atttcaaggatatttataagccaatcccatttgtttacaatcttgttcttgctatgttatggcgtcaccctgaaaatgttgagcttcataaagtcaaggt |
45037423 |
T |
|
| Q |
308 |
tgttcactattgtgcagcggtaagtaatggaatgcatattttgatttattgattgtgtgaataaattt---------------ttaca-tgacttgattt |
391 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
45037424 |
tgttcactattgtgcagcggtaagtaatgcaatgcatattttgatttattgattgtgtgaataaatttgaagtgcataaatttttacagtgacttgattt |
45037523 |
T |
|
| Q |
392 |
ttcgattttgttcagggatcaaagccttggagatacacagggaaggaagaaaacatgcaaagggaggatataagaatgctagtcaagaaatggtgggata |
491 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45037524 |
ttcgattttgttcagggatcaaagccttggagatacacagggaaggaagaaaacatgcaaagggaggatataagaatgctagtcaagaaatggtgggata |
45037623 |
T |
|
| Q |
492 |
tttacaatgattcatctcttgattacaacaagaatttgagtggaagtggtgaagtacaaacgaatggtgttgaaattgagccattcgtacaagcattgtc |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
45037624 |
tttacaatgattcatctcttgattacaacaagaatttgagtggaagtggtgaagtacaaacgaatggttttgaaattgagccattcgtacaagcattgtc |
45037723 |
T |
|
| Q |
592 |
tgaggtaggtcgtgttcaatatgtcacagcaccttcagcagcttaaactgagctgttttttggtgaccattcattcgtgcaatggaagcaaaaacataaa |
691 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45037724 |
tgaggtaggtcgtgttcaatatgtcacagcaccttcagcagcttaaactgagctgttttttggtgaccattcattcgtgcaatggaagcaaaaacataaa |
45037823 |
T |
|
| Q |
692 |
aaatgaagtaaggaataacgatggaaattattatggaagtgagtaaaaaagtttaggtgcaaccgttctagaannnnnnncaagaccaggggaaatggtt |
791 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||| ||||||||||||| |
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|
| T |
45037824 |
aaatgaagtaaggaataacgatggaaattattatggaagtgagt-aaaaagtttaggtgcaaccgttcaagaatttttttcaagacaaggggaaatggtt |
45037922 |
T |
|
| Q |
792 |
ggtgctatatttcagcttttgtgtg |
816 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
45037923 |
ggtgctatatttcagcttttgtgtg |
45037947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 322
Target Start/End: Complemental strand, 45944147 - 45944023
Alignment:
| Q |
198 |
ttgaatatgtatttcaaggatatttataagccaatcccattggtttacaatcttgttcttgctatgttatggcgtcatcctgaaaatgttgagcttcata |
297 |
Q |
| |
|
||||| |||||||||||||||| || ||||| || || || ||||||||||| | || ||| | |||||||||||||| |||||||||||| | | |
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|
| T |
45944147 |
ttgaacatgtatttcaaggataaatacaagcctatacctaatgtgtacaatcttgtgttggccatgatgtggcgtcatcctgagaatgttgagcttgaga |
45944048 |
T |
|
| Q |
298 |
aagtcaaggttgttcactattgtgc |
322 |
Q |
| |
|
|||| | ||||||||||||||||| |
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|
| T |
45944047 |
aagttcaagttgttcactattgtgc |
45944023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 191 - 332
Target Start/End: Original strand, 20395224 - 20395365
Alignment:
| Q |
191 |
agatttcttgaatatgtatttcaaggatatttataagccaatcccattggtttacaatcttgttcttgctatgttatggcgtcatcctgaaaatgttgag |
290 |
Q |
| |
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|||||| ||||||||||||||||| |||| |||||||| ||||| |||||||||||||| || || ||||| |||||||||||||| |||||||| |
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| T |
20395224 |
agattttttgaatatgtatttcaatgataaatataagcctatccctaatgtttacaatcttgtgctggccatgttgtggcgtcatcctgagaatgttgaa |
20395323 |
T |
|
| Q |
291 |
cttcataaagtcaaggttgttcactattgtgcagcggtaagt |
332 |
Q |
| |
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||| | |||||||| |||||||| || ||||||||||||||| |
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|
| T |
20395324 |
cttgagaaagtcaaagttgttcattactgtgcagcggtaagt |
20395365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 37687052 - 37686915
Alignment:
| Q |
192 |
gatttcttgaatatgtatttcaaggatatttataagccaatcccattggtttacaatcttgttcttgctatgttatggcgtcatcctgaaaatgttgagc |
291 |
Q |
| |
|
||||| ||||| || |||||||| || | ||||||||||| ||| ||||| |||||||| | || ||||| |||||||| ||||| |||||||| | |
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| T |
37687052 |
gattttttgaacatatatttcaaagacaaatataagccaattccaaatgtttataatcttgtgttggccatgttgtggcgtcaccctgagaatgttgaac |
37686953 |
T |
|
| Q |
292 |
ttcataaagtcaaggttgttcactattgtgcagcggta |
329 |
Q |
| |
|
|| | |||||||| |||||||| || |||||||||||| |
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|
| T |
37686952 |
ttgagaaagtcaaagttgttcattactgtgcagcggta |
37686915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 192 - 329
Target Start/End: Original strand, 37698466 - 37698603
Alignment:
| Q |
192 |
gatttcttgaatatgtatttcaaggatatttataagccaatcccattggtttacaatcttgttcttgctatgttatggcgtcatcctgaaaatgttgagc |
291 |
Q |
| |
|
||||| ||||| || |||||||| || | ||||||||||| ||| ||||| |||||||| | || ||||| |||||||| ||||| |||||||| | |
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| T |
37698466 |
gattttttgaacatatatttcaaagacaaatataagccaattccaaatgtttataatcttgtgttggccatgttgtggcgtcaccctgagaatgttgaac |
37698565 |
T |
|
| Q |
292 |
ttcataaagtcaaggttgttcactattgtgcagcggta |
329 |
Q |
| |
|
|| | |||||||| |||||||| || |||||||||||| |
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|
| T |
37698566 |
ttgagaaagtcaaagttgttcattactgtgcagcggta |
37698603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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