View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4359-Insertion-4 (Length: 630)
Name: NF4359-Insertion-4
Description: NF4359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4359-Insertion-4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 167; Significance: 4e-89; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 47381246 - 47381526
Alignment:
| Q |
8 |
cagtgtataggagccacaacactagatgaatacaggaagcacattgaaaaggatccagctttcgagaggagattcctgccagttaaagtgccggagccaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
47381246 |
cagtgtataggagccacaacactagatgaatacaggaagcacattgaaaaagatccagctttggagaggagattccagccagttaaagtgccagagccaa |
47381345 |
T |
|
| Q |
108 |
ctgtgactgaaacaatacaaatactgaaaggggttagacggtgcatagagattcaccacaagctccattataccgatgatgctcttgtagctgctgcaaa |
207 |
Q |
| |
|
|||||| |||||| ||||||||| |||||||| ||||| | || ||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
47381346 |
ctgtgagtgaaaccatacaaatattgaaagggcttagagagcgctatgagattcaccacaagctccgttataccgatgatgctcttgtagctgctgcaga |
47381445 |
T |
|
| Q |
208 |
gctgttatatcaatatatcaggtttgtaatgatttatacatatgtacattctctcctcattttcaattgtaatttaggctgtg |
290 |
Q |
| |
|
||||| |||||||||||||||||||| || ||||||| |||| |||||||||||||| |||||||| | ||||| |||||| |
|
|
| T |
47381446 |
gctgtcatatcaatatatcaggtttgacataatttata-ttatgcacattctctcctca-tttcaattttgatttatgctgtg |
47381526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 8 - 269
Target Start/End: Original strand, 47816711 - 47816972
Alignment:
| Q |
8 |
cagtgtataggagccacaacactagatgaatacaggaagcacattgaaaaggatccagctttcgagaggagattcctgccagttaaagtgccggagccaa |
107 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
47816711 |
cagtgtatatgagccacaacactagatgaatacaggaagcacattgaagaagatccagctttggagaggaaattccagccagttaaagtgctagagccaa |
47816810 |
T |
|
| Q |
108 |
ctgtgactgaaacaatacaaatactgaaaggggttagacggtgcatagagattcaccacaagctccattataccgatgatgctcttgtagctgctgcaaa |
207 |
Q |
| |
|
|||||| |||||| ||||||||| |||||||| ||||| | || ||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
47816811 |
ctgtgagtgaaaccatacaaatattgaaagggcttagagagcgctatgagattcaccacaagctccgctataccgatgatgctcgtgtagctgctgcagg |
47816910 |
T |
|
| Q |
208 |
gctgttatatcaatatatcaggtttgtaatgatttatacatatgtacattctctcctcattt |
269 |
Q |
| |
|
||| | | ||||||||||||||||| || ||||||| |||| ||||||||||||||||| |
|
|
| T |
47816911 |
gctatcacatcaatatatcaggttttacataatttatatttatgcacattctctcctcattt |
47816972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 355 - 605
Target Start/End: Original strand, 47381639 - 47381871
Alignment:
| Q |
355 |
tttggaattttgcattatgcctttgaattgttcacaacatttattttggaactctcatatagttgtgaatatgaaagaatcaaattgtaccttgtatctt |
454 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| |
|
|
| T |
47381639 |
tttggaatttatcattatgcctttaaattgtttacaaaatttattttggaactctcatatagttgtgaatatgaatgaatcaaactgtaccctgtatctt |
47381738 |
T |
|
| Q |
455 |
gttgttttctacctgttgtttatcttaaagtattttctagttcataaaataattatgtcttctgcagtgatcgatttttgcctgacaaagctatagattt |
554 |
Q |
| |
|
||||||||| ||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47381739 |
gttgttttccacctgctgtttatctta------------------ataataattatgtcttctgcagtgatcgatttttgcctgacaaagctatagattt |
47381820 |
T |
|
| Q |
555 |
gattgacgaagttggttcccaagttcgactgcaacatgtgcaggtattgtt |
605 |
Q |
| |
|
|||||| |||| |||||||| ||||||||| ||||||| ||||||||||| |
|
|
| T |
47381821 |
gattgatgaagctggttcccgagttcgacttcaacatgcacaggtattgtt |
47381871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 355 - 589
Target Start/End: Original strand, 47817132 - 47817348
Alignment:
| Q |
355 |
tttggaattttgcattatgcctttgaattgttcacaacatttattttggaactctcatatagttgtgaatatgaaagaatcaaattgtaccttgtatctt |
454 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| |||| ||||| |||| |||||||||||||||||||||||||| |||| ||| |||||| |||||||| |
|
|
| T |
47817132 |
tttggaatttagcatcatgcctttgaattgtttacaaaatttactttgaaactctcatatagttgtgaatatgaatgaattaaactgtaccctgtatctt |
47817231 |
T |
|
| Q |
455 |
gttgttttctacctgttgtttatcttaaagtattttctagttcataaaataattatgtcttctgcagtgatcgatttttgcctgacaaagctatagattt |
554 |
Q |
| |
|
||||||||| ||||| ||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47817232 |
gttgttttccacctgctgtttatctta------------------ataataattatgtcttctgcagtggtcgatttttgcctgacaaagctatagattt |
47817313 |
T |
|
| Q |
555 |
gattgacgaagttggttcccaagttcgactgcaac |
589 |
Q |
| |
|
||||||||||| |||||||| ||||||||| |||| |
|
|
| T |
47817314 |
gattgacgaagctggttcccgagttcgacttcaac |
47817348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 45113331 - 45113562
Alignment:
| Q |
8 |
cagtgtataggagccacaacactagatgaatacaggaagcacattgaaaaggatccagctttcgagaggagattcctgccagttaaagtgccggagccaa |
107 |
Q |
| |
|
|||||||| |||||||| ||| | |||||||||||||||||||| ||||| || |||||||| ||||| |||||| |||||||||||| || || |||| |
|
|
| T |
45113331 |
cagtgtattggagccaccacattggatgaatacaggaagcacatcgaaaaagacccagctttggagagacgattccagccagttaaagtaccagaaccaa |
45113430 |
T |
|
| Q |
108 |
ctgtgactgaaacaatacaaatactgaaaggggttagacggtgcatagagattcaccacaagctccattataccgatgatgctcttgtagctgctgcaaa |
207 |
Q |
| |
|
|||| |||||| ||||||||||||||||| ||||| | || |||||||||||||||| ||||| ||||| |||||| |||||||||| | |
|
|
| T |
45113431 |
ctgttgatgaaaccatacaaatactgaaaggacttagagaacgttatgaaattcaccacaagctccgatatactgatgacgctcttatagctgctgcgca |
45113530 |
T |
|
| Q |
208 |
gctgttatatcaatatatcaggtttgtaatga |
239 |
Q |
| |
|
|| | ||| || |||||||||||||| |||| |
|
|
| T |
45113531 |
actttcataccagtatatcaggtttgtcatga |
45113562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 516 - 601
Target Start/End: Original strand, 45114470 - 45114555
Alignment:
| Q |
516 |
ctgcagtgatcgatttttgcctgacaaagctatagatttgattgacgaagttggttcccaagttcgactgcaacatgtgcaggtat |
601 |
Q |
| |
|
||||||||||||||||||||| |||||||| || ||||||||||| |||| |||||| | ||| || || ||||||| ||||||| |
|
|
| T |
45114470 |
ctgcagtgatcgatttttgcccgacaaagccattgatttgattgatgaagctggttcacgagtccgtcttcaacatgcacaggtat |
45114555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 2e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 8 - 296
Target Start/End: Original strand, 40243956 - 40244244
Alignment:
| Q |
8 |
cagtgtataggagccacaacactagatgaatacaggaagcacattgaaaaggatccagctttcgagaggagattcctgccagttaaagtgccggagccaa |
107 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||| |||||| || ||||||||||| ||||||| |
|
|
| T |
40243956 |
cagtgtataggagccacaactctagatgaatataggaagcacattgaaaaagatccagctttggagaggcgattccaacctgttaaagtgccagagccaa |
40244055 |
T |
|
| Q |
108 |
ctgtgactgaaacaatacaaatactgaaaggggttagacggtgcatagagattcaccacaagctccattataccgatgatgctcttgtagctgctgcaaa |
207 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| ||||| | || ||||||||||||||||||| |||||| ||||| |||||||||||||||||| | |
|
|
| T |
40244056 |
ctgttcctgaaaccatacaaatactgaaaggacttagagagcgctatgagattcaccacaagctccgttatactgatgaggctcttgtagctgctgcaga |
40244155 |
T |
|
| Q |
208 |
gctgttatatcaatatatcaggtttgtaatgatttatacatatgtacattctctcctcattttcaattgtaatttaggctgtggaaaag |
296 |
Q |
| |
|
||||| | |||||||||| ||||| || || ||||||| |||| ||||||||| | | ||||||||| ||||||| | | |||||||| |
|
|
| T |
40244156 |
gctgtcacatcaatatattaggttggtcataatttatatttatgcacattctctgccccttttcaattttaatttatgatatggaaaag |
40244244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 357 - 630
Target Start/End: Original strand, 40244302 - 40244577
Alignment:
| Q |
357 |
tggaattttgcattatgcctttgaattgttc-acaacatttattttggaactctcatatagttgt-gaatatgaaagaatcaaattgtaccttgt---at |
451 |
Q |
| |
|
|||||||| | ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | || ||| |||||||| || ||||| | || |
|
|
| T |
40244302 |
tggaatttagtattatgcctttgaattgttttacaacatt-attttggaactctcacatagttgttgtatgggaatgaatcaaactgcaccttcttctat |
40244400 |
T |
|
| Q |
452 |
cttgttgttttctacctgttgtttatcttaaagtattttctagttcataaaataattatgtcttctgcagtgatcgatttttgcctgacaaagctataga |
551 |
Q |
| |
|
|||||| | |||||| || ||||||| | |||| |||||| |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40244401 |
cttgttatcttctacttgctgtttat--tcaagtgttttctcactcataaaataattatgacttttgcagcgatcgatttttgcctgacaaagctataga |
40244498 |
T |
|
| Q |
552 |
tttgattgacgaagttggttcccaagttcgactgcaacatgtgcaggtattgttcatccaccattctctgaaccagcag |
630 |
Q |
| |
|
||||||||| |||| |||||||| ||| ||||| ||||||| |||||||||||||||||||| || |||||||||||| |
|
|
| T |
40244499 |
tttgattgatgaagctggttcccgagtccgacttcaacatgcacaggtattgttcatccaccaatccctgaaccagcag |
40244577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 4e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 418 - 615
Target Start/End: Complemental strand, 34055508 - 34055312
Alignment:
| Q |
418 |
tgtgaatatgaaagaatcaaattgtaccttgtatcttgttgttttctacctgttgtttatcttaaagtattttctagttcataaaataattatgtcttct |
517 |
Q |
| |
|
|||||||||||| |||||||| ||||| | |||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
34055508 |
tgtgaatatgaatgaatcaaaatgtacttcgtatcttgttgttttctacctgctgtttatcttaa-gtattttctcgttcataaaataattatgtcttct |
34055410 |
T |
|
| Q |
518 |
gcagtgatcgatttttgcctgacaaagctatagatttgattgacgaagttggttcccaagttcgactgcaacatgtgcaggtattgttcatccaccat |
615 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| || ||||| |||||| | ||||| ||| ||||| | || |||||||| ||| ||||| |
|
|
| T |
34055409 |
gcagtgatcaatttttgcctgacaaagctatagatttgaatgccgaagctggttctcgagttcaacttcaacaggcacatgtattgtttatctaccat |
34055312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 34055604 - 34055504
Alignment:
| Q |
14 |
ataggagccacaacactag-atgaatacaggaagcacattgaaaaggatccagctttcgagaggagattcctgccagttaaagtgccggagccaactgtg |
112 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||| ||||||||||||| |||||| |||||||| ||||||||||| |
|
|
| T |
34055604 |
ataggagccacaacactaggatgaatacaggaagcacattgaaaaagatccacctttggagaggagattccagccagtgaaagtgccaaagccaactgtg |
34055505 |
T |
|
| Q |
113 |
a |
113 |
Q |
| |
|
| |
|
|
| T |
34055504 |
a |
34055504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University