View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4359-Insertion-5 (Length: 465)
Name: NF4359-Insertion-5
Description: NF4359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4359-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 393
Target Start/End: Original strand, 26629856 - 26630231
Alignment:
| Q |
10 |
cttctattgtgtctcagtttccaaataggaccaaagttcaagcaacatctaaacatgagttagcttcttcaaatgaaaatggcaataagtcaaatgtagt |
109 |
Q |
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| T |
26629856 |
cttctatcgtgtctcagtttccaaatgggactgaagttcaagcaacatctaaacatgagttaacttcttcacataaaaatggcaatgagtcaaatgttgt |
26629955 |
T |
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| Q |
110 |
ggagacaaaaatgaaacaaacagaagagagaaagcaaaactttgttttaaacattcctggtttagagataccttcagtagcaaattcaccaacaaattca |
209 |
Q |
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| T |
26629956 |
ggagacaaaaatgaaacaaacagaagagagaaagcaagaatttgttgtaaacattcctggtttagagattccttcggtagcaaattcaccaacaatttca |
26630055 |
T |
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| Q |
210 |
caagtaattttccagccatgtcccttccttcgatattcttcttatgaaatccgttcttatggatataatgaatggctaagtataagggatgtaattagta |
309 |
Q |
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| T |
26630056 |
caagtaattttccagccatgtcccttccttcgatattcttcttataaaatccattcttatggatataatgaa--------tataaggaatgtaattagta |
26630147 |
T |
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| Q |
310 |
gtttcacatatctaacgcttagtttccaaattgtagaagttgttgaatgaacaatcaacgagtcaacaatgtttgatggatcaa |
393 |
Q |
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| T |
26630148 |
gtttcacatctctaacgcttaatttcctaatcgcaggagttgttgaatgaacaatcaacgagtcaacaatgtttgatggatcaa |
26630231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 26630197 - 26630267
Alignment:
| Q |
395 |
aacaatcaaagagtcaacaatgtttgatggatcaaagtattcaagagggttctactttacagaaaactgtc |
465 |
Q |
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| T |
26630197 |
aacaatcaacgagtcaacaatgtttgatggatcaaagtattcaagagggttctacgttacagaaaactgtc |
26630267 |
T |
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