View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4359-Insertion-6 (Length: 453)
Name: NF4359-Insertion-6
Description: NF4359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4359-Insertion-6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 207 - 453
Target Start/End: Complemental strand, 3685208 - 3684962
Alignment:
| Q |
207 |
tagtctcatggaccttttctttttctagaatgtatttcctctttgtctttcccatgttcattattgcaaaccttctttctttcctcttggttgtgaattt |
306 |
Q |
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| T |
3685208 |
tagtctcatggaccttttctttttctagaatgtatctcctctttgtctttcccatgttcattattgcaaaccttccttctttcctcttggttgtgaattt |
3685109 |
T |
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| Q |
307 |
gtcatggaataacgaatcccttctttggaacccttagttgaagacaaatcaaaaatatgacaaagagataagtcactcttgggctctgcctcgatcttcc |
406 |
Q |
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| T |
3685108 |
gtcatggaataacgaatcccttctttggaacccttagttgaagacaaatcaaaaatatgacaaagagataagtcactgttgggctctgcctcgatcttcc |
3685009 |
T |
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| Q |
407 |
ctgggtggaaaagtggatgctaggtcaagaaaccaatgtccattgag |
453 |
Q |
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| T |
3685008 |
ctgggtggaaaagtggatgctaggtcaagaaaccaatgtccattgag |
3684962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 7 - 208
Target Start/End: Complemental strand, 3686774 - 3686571
Alignment:
| Q |
7 |
aaatacaagtttgcacttcctctttgatgatgatgattaaattgtccaatcatattattttagtccacgataattattctttttattttagac--tnnnn |
104 |
Q |
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| T |
3686774 |
aaatacaagtttgtacttcctctttgatgatgatgattaaattgtccaatcatattattttagtccacgataattattctttttattttagacaaaaaaa |
3686675 |
T |
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| Q |
105 |
nnnnttaagggcattttttacgaaaacacgaataaatttcattcaaataaaaggctcaaaagtttgtcattcttcgctctaatattcattacaaccacct |
204 |
Q |
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| T |
3686674 |
aaaattaaggacattttttacgaaaacacgaatacatttcattcaaataaaaggctcaaaagtttgtcattcttcgctctaatattcattacaatcacct |
3686575 |
T |
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| Q |
205 |
aata |
208 |
Q |
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| T |
3686574 |
aata |
3686571 |
T |
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