View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4359-Insertion-8 (Length: 341)
Name: NF4359-Insertion-8
Description: NF4359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4359-Insertion-8 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 7 - 341
Target Start/End: Complemental strand, 8019483 - 8019135
Alignment:
| Q |
7 |
aaattcaatcaccgccctgaacttaaacaatcatgcactgcctttataacaaaacaaaatttacatcaatcaatttttctagttaatagataaaatagtt |
106 |
Q |
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| T |
8019483 |
aaattcaatcaccactctgaacctaaacaatcatgcactgcctttataaccaaacaaaatttacatcaatcaacttttcaagttaatagataaaatagtt |
8019384 |
T |
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| Q |
107 |
gtaatgcttttatgtaaatttttaagtataataccagaaattaaaataacagtcgtgttaatgcttttacatctcccaaaattcaatcaccaaaatccac |
206 |
Q |
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| T |
8019383 |
gtaatgcttttatgtaaatttttaagtataataccaaaaattaaaatagcagttgtgttaatgcttttacatctcccaaaattcaatcaccaaaatgcac |
8019284 |
T |
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| Q |
207 |
atgcatgtatttctttaggtcacgaaaacaaagtccaaaatgcaaaaccagaattgc--------------aacatcaaacatgcaatggtgataccttt |
292 |
Q |
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| T |
8019283 |
atgcatgtatttctttaggtcacaaaaacaaagtccaaaatgcaaaaccagaattgcaacaccagaatcgcaacaccaaacatgcaaaggtgataccttt |
8019184 |
T |
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| Q |
293 |
aggtcnnnnnnngcatctttctgcaaagaaaatacctttctacaaaaat |
341 |
Q |
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| T |
8019183 |
aggtcaaaaaaagcatctttctgcaaagaaaatatttttctacaaaaat |
8019135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 133 - 274
Target Start/End: Original strand, 42175741 - 42175883
Alignment:
| Q |
133 |
tataataccagaaattaaaa-taacagtcgtgttaatgcttttacatctcccaaaattcaatcaccaaaatccacatgcatgtatttctttaggtcacga |
231 |
Q |
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| T |
42175741 |
tataataccagagattaaaaatagcaggcgttttaaagcttttgcatcttccaaaattcaatcaccaaaattcacatgcatgcatttctttaggtcagga |
42175840 |
T |
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| Q |
232 |
aaacaaagtccaaaatgcaaaaccagaattgcaacatcaaaca |
274 |
Q |
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| T |
42175841 |
aaagaaagtccaaaatgcaaaatcggaattgcaacaccaaaca |
42175883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 8019534 - 8019470
Alignment:
| Q |
134 |
ataataccagaaattaaaataacagtcgtgttaatgcttttacatctcccaaaattcaatcacca |
198 |
Q |
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| T |
8019534 |
ataatgccagaagttaaaataacagttgtattagggcttttgcaacccccaaaattcaatcacca |
8019470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 200
Target Start/End: Complemental strand, 32638389 - 32638281
Alignment:
| Q |
91 |
aatagataaaatagttgtaatgcttttatgtaaatttttaagtataataccagaaattaaaataacagtcgtgttaatgcttttacatctcccaaaattc |
190 |
Q |
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| T |
32638389 |
aatagatagaatagttgtaatccttttatgtaaa-ttttaactttaatgacagaagttaaagtagtagttgtgttagagcttttgcatcccccataattc |
32638291 |
T |
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| Q |
191 |
aatcaccaaa |
200 |
Q |
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| T |
32638290 |
attcaccaaa |
32638281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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