View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4359-Insertion-9 (Length: 336)
Name: NF4359-Insertion-9
Description: NF4359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4359-Insertion-9 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 7 - 336
Target Start/End: Complemental strand, 47605396 - 47605069
Alignment:
| Q |
7 |
agatataaatgtcaagtaccaattgtcaaggaaatcagcctcatggacaagggcctcatcaacatgtaaactcttattttatggatgaaagttagggcat |
106 |
Q |
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| T |
47605396 |
agatataaatgtcaagtaccaattgtcaaggaaatcagcctcatggacaagggcctcatcaacatgtaaactctaattt-atggatgaaagttagggcat |
47605298 |
T |
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| Q |
107 |
agttgcaatagttcttatatgtctactttttctattagattcttcatatgcaattgtaagacttttagtttcaaaggcatagcctctctttcgttttgac |
206 |
Q |
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| T |
47605297 |
agttgcaatagttcttatatgtctactttttctattagattcttcatatgcaattgtaagacttttagtttcaaaggcatagcctctctttcgttttgac |
47605198 |
T |
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| Q |
207 |
ctctatgtcatttagattttcaaatatacattgactttcactttattaattcatgcaggaccctctcaactttttcatttcctttcttattgatgannnn |
306 |
Q |
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| T |
47605197 |
ctctatgtcatttagattttcaactatacattgactttcactttattaattcatgcagaaccctctcaactttttcatttcctttcttattgatga-ttt |
47605099 |
T |
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| Q |
307 |
nnnnnacttggattatatccatgtctgtca |
336 |
Q |
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| T |
47605098 |
tttttacttggattatatccatgtctgtca |
47605069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 53 - 301
Target Start/End: Original strand, 19929477 - 19929725
Alignment:
| Q |
53 |
acaagggcctcatcaacatgtaaactcttattttatggatgaaagttagggcatag-ttgcaatagttcttatatgtctactttttctattagattcttc |
151 |
Q |
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| T |
19929477 |
acaagggcctcatcaacatgtaaactcttatttgattgatgaaagttatgtcatagtttacaatagttct--tatgtctactttttaaattagattcttc |
19929574 |
T |
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| Q |
152 |
atatgcaattgtaaga-cttttagtttcaaaggcatagcctctctttcgttttgacctctatgtcatttagattttcaaatatacattgactttcacttt |
250 |
Q |
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| T |
19929575 |
gtatgcaatggtaagatctgatgctttcaaaggcatgacctctgtttcattttgacctctataacatttaaattttcaaatatgtattgactttcacgta |
19929674 |
T |
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| Q |
251 |
attaattcatgcaggaccctctcaactttttcatttcctttcttattgatg |
301 |
Q |
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| T |
19929675 |
attaattgatactagatcctctcaactttttcatttattttcttattgatg |
19929725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 53 - 287
Target Start/End: Original strand, 19935754 - 19935990
Alignment:
| Q |
53 |
acaagggcctcatcaacatgtaaactcttattttatggatgaaagttagggcatagttgcaatagttcttatatgtctactttttctattagattcttca |
152 |
Q |
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| T |
19935754 |
acaagggcctcatcaacatgtaaactcttgtttgattgatgaaagttaggtcatagttgctatagttcttatatgtctactttttatattagaatctttg |
19935853 |
T |
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| Q |
153 |
tatgcaattgtaaga-cttttagtttcaaaggcatagcctctctttcgttttgacctc-tatgtcatttagattttcaaatatacattgactttcacttt |
250 |
Q |
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||| |||| |||| | || | ||||||||||||| |||||| |||| ||||||||| |||||||||| |||||||||||| |||||||||||| | |
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| T |
19935854 |
tattcaatggtaacatctgatggtttcaaaggcatggcctctgtttcaatttgacctcttatgtcatttcaattttcaaatatgtattgactttcacgta |
19935953 |
T |
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| Q |
251 |
attaattcatgcaggaccctctcaactttttcatttc |
287 |
Q |
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| T |
19935954 |
actaattgatgctagatcctctcaactttttcttttc |
19935990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 53 - 287
Target Start/End: Original strand, 19966893 - 19967129
Alignment:
| Q |
53 |
acaagggcctcatcaacatgtaaactcttattttatggatgaaagttagggcatagttgcaatagttcttatatgtctactttttctattagattcttca |
152 |
Q |
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| T |
19966893 |
acaagggcctcatcaacatgtaaactcttgtttgattgatgaaagttaggtcatagttgctatagttcttatatgtctactttttatattagaatctttg |
19966992 |
T |
|
| Q |
153 |
tatgcaattgtaaga-cttttagtttcaaaggcatagcctctctttcgttttgacctc-tatgtcatttagattttcaaatatacattgactttcacttt |
250 |
Q |
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||| |||| |||| | || | ||||||||||||| |||||| |||| ||||||||| |||||||||| |||||||||||| |||||||||||| | |
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| T |
19966993 |
tattcaatggtaacatctgatggtttcaaaggcatggcctctgtttcaatttgacctcttatgtcatttcaattttcaaatatgtattgactttcacgta |
19967092 |
T |
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| Q |
251 |
attaattcatgcaggaccctctcaactttttcatttc |
287 |
Q |
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| T |
19967093 |
actaattgatgctagatcctctcaactttttcttttc |
19967129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 149
Target Start/End: Complemental strand, 19973624 - 19973524
Alignment:
| Q |
47 |
tcatggacaagggcctcatcaacatgtaaactcttattttatggatgaaagttagggcatagttgcaatagttcttatatgtctactttttctattagat |
146 |
Q |
| |
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|||| ||||||||||||| |||||||||||||||||||| || ||||| || |||||||| | |||| ||||||| ||||| | |||||| |||||||| |
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| T |
19973624 |
tcatcgacaagggcctcaacaacatgtaaactcttatttgattgatgacagctagggcatcgctgcattagttct--tatgtgtgctttttgtattagat |
19973527 |
T |
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| Q |
147 |
tct |
149 |
Q |
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||| |
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| T |
19973526 |
tct |
19973524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 4287940 - 4287855
Alignment:
| Q |
54 |
caagggcctcatcaacatgtaaactcttattttatggatgaaagttagggcata--gttgcaatagttcttatatgtctacttttt |
137 |
Q |
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| T |
4287940 |
caagggcctcaacaacatgcaaattcgtgtttgattgacgacaattagggcatatagttgcaatagttcttatatgtctacttttt |
4287855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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