View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4359_high_1 (Length: 509)
Name: NF4359_high_1
Description: NF4359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4359_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 30790692 - 30791185
Alignment:
| Q |
1 |
attattcttcaaattgaaactgctataatttgatcggatcagccgtatgaaaatgataatggttaagtgtcccacattggtctgaaaatgtatttattag |
100 |
Q |
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| T |
30790692 |
attattcttcaaattgaaactgctataatttgatcggatcagccgtatgaaaatgataatggttatgtgtcccacattggtctgaaaatgtatttattag |
30790791 |
T |
|
| Q |
101 |
taaggcaagacaattctcaccttctaaaccgataaaggttgagttaggccaaatctaaaatttaagatgatatcatagcctattcaatattcattgggcc |
200 |
Q |
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| T |
30790792 |
taaggcaagacaattctcaccttctaaaccgataaaggttgagttaggccaaatctaaaatctaagatgatatcatagcctattcaatatttattggacc |
30790891 |
T |
|
| Q |
201 |
atttgctatcaaattaacgttatcgggtcacttgagtcacattccagatactcaatttgggtgtgaaggggtgtgttaagagttccccattagacgagat |
300 |
Q |
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| T |
30790892 |
atttgctatcaaattaccgttattgggtcacttgagtcacattccagatactcaatttgggtgtgaaggggtgtgttaagagttccacattagacgagat |
30790991 |
T |
|
| Q |
301 |
aaaacatggaaataatcagtttataagtgaagtcagtcctcataatacaagtcggttttgtaagagtcgagttaggtagagcgtgttataatttggttga |
400 |
Q |
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| T |
30790992 |
aaaacatggaaataatcagtttataagtggaatcagtcctcataatacaagtcggttttgtaagagtcgagttaggtcgagcgtgttataatttcgttga |
30791091 |
T |
|
| Q |
401 |
gcgagaaaccctaatttctaacttcacagaaccactttaagaatgtcttgaaaaatgaaaatattgaatctgccgtaaatacaaagatagattt |
494 |
Q |
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| T |
30791092 |
gcgagaaactctaatttctaacttcacagaaccactttaagaatgtcttgaaaaatgaaaatattgaatctgccgtaaatacaaagatagattt |
30791185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 14596210 - 14596162
Alignment:
| Q |
135 |
aaggttgagttaggccaaatctaaaatttaagatgatatcatagcctat |
183 |
Q |
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|||||||||||||||| |||| ||| ||||||||||||| | ||||||| |
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| T |
14596210 |
aaggttgagttaggcccaatcaaaattttaagatgatattagagcctat |
14596162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 16015738 - 16015690
Alignment:
| Q |
135 |
aaggttgagttaggccaaatctaaaatttaagatgatatcatagcctat |
183 |
Q |
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|||||||||||||||| |||| ||| ||||||||||||| | ||||||| |
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| T |
16015738 |
aaggttgagttaggcccaatcaaaattttaagatgatattagagcctat |
16015690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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