View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4359_high_4 (Length: 249)
Name: NF4359_high_4
Description: NF4359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4359_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 45037128 - 45036907
Alignment:
| Q |
19 |
gtggtgtgtgactccaagttctctcgcaaaaacaatccataacagcgtagaaatgaccatctggtagatcaaagagatggtctatgttttcataaacttg |
118 |
Q |
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| T |
45037128 |
gtggtgtgtgactccaagttctctcgcaaaaacaatccataacagcgtagaaatgaccatctggtagatcaaagagatggtctatgttttcataaacttg |
45037029 |
T |
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| Q |
119 |
aatgtctccgtccaagtatatcatcttgctgtattccacaaactgtaacataataaatatagctcaaataagtacactttccttcctagttttatggtgc |
218 |
Q |
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| T |
45037028 |
aatgtctccgtccaagtatatcatcttgctgtattccacaaactgtaacataataaatatagctcaaataagtacactttccttcctagttttatggtgc |
45036929 |
T |
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| Q |
219 |
acagatttattttatgaatcat |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
45036928 |
acagatttattttatgaatcat |
45036907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 45944447 - 45944585
Alignment:
| Q |
24 |
gtgtgactccaagttctctcgcaaaaacaatccataacagcgtagaaatgaccatctggtagatcaaagagatggtctatgttttcataaacttgaatgt |
123 |
Q |
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| T |
45944447 |
gtgtgactccaagtcttttcacagaaacagtccatcacagcatagaagtaatcatcaggcagatcaaatagatgatcaatgttttcaaacacttggatgt |
45944546 |
T |
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| Q |
124 |
ctccgtccaagtatatcatcttgctgtattccacaaact |
162 |
Q |
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| T |
45944547 |
caccatctaagtagatcatcttgctgtactcctcaaact |
45944585 |
T |
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