View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4359_low_2 (Length: 354)
Name: NF4359_low_2
Description: NF4359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4359_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 26126504 - 26126845
Alignment:
| Q |
1 |
aagagccaacactgaacaagttttggatatttgttaaatttttcccacttctagatatctcacatcgattctgagttttggatagttgtgtgacggcagc |
100 |
Q |
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| T |
26126504 |
aagagccaacactgaacaagttttggatatttgttaaatttttcccacttctagatatctcacatcgattttgagttttggatagttgtgtaacggcagc |
26126603 |
T |
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| Q |
101 |
aaggattttaactgagggagaagatgcatccggaaggtgacaagacgagtaatttgaagacaatgattaatgagtaatgaatttggaatatacttatgtt |
200 |
Q |
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| T |
26126604 |
aaggattttaactgagggagaagatgcatccggaaggtgacgagacgagtaatttgaagacaatgattaatgagtaatgaatttggaatatacttatgtt |
26126703 |
T |
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| Q |
201 |
tcagttttgagaggaaacgctaaaaggttacaaacctttctgtactaatgctaaaagatctcttgaatctttaggagtaaattaggcaatgtggatagaa |
300 |
Q |
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| T |
26126704 |
tcagttttgagaggaaacgccaaaaggttacaaacctttctgtactaatgctaaaagatctcttgaatctttaggagtaaattaggcaatgtggatagaa |
26126803 |
T |
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| Q |
301 |
cactgctgtgagtgacattgctcaattattgaagttgatatt |
342 |
Q |
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| T |
26126804 |
cactgctgtgagtgacattgctcaattattgaagttgatatt |
26126845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 45512837 - 45512893
Alignment:
| Q |
180 |
aatttggaatatacttatgtttcagttttgagaggaaacgctaaaaggttacaaacc |
236 |
Q |
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| T |
45512837 |
aattaggaatacacctatgtttcagttttgagagggaatgccaaaatgttacaaacc |
45512893 |
T |
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