View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4360-Insertion-1 (Length: 1110)

Name: NF4360-Insertion-1
Description: NF4360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4360-Insertion-1
NF4360-Insertion-1
[»] chr8 (2 HSPs)
chr8 (521-940)||(11712735-11713154)
chr8 (8-474)||(11713635-11714095)
[»] chr4 (4 HSPs)
chr4 (601-665)||(4161612-4161676)
chr4 (799-841)||(29896761-29896803)
chr4 (608-665)||(17381281-17381338)
chr4 (614-659)||(47463921-47463966)
[»] chr3 (3 HSPs)
chr3 (610-658)||(30843863-30843911)
chr3 (769-841)||(25536076-25536152)
chr3 (608-650)||(46848437-46848479)
[»] chr1 (4 HSPs)
chr1 (608-672)||(3047762-3047826)
chr1 (608-665)||(34177537-34177594)
chr1 (608-665)||(35684941-35684998)
chr1 (608-665)||(45392285-45392342)
[»] scaffold0329 (1 HSPs)
scaffold0329 (611-665)||(6493-6547)
[»] chr5 (2 HSPs)
chr5 (604-646)||(34034906-34034948)
chr5 (608-665)||(23159026-23159083)
[»] chr2 (3 HSPs)
chr2 (799-841)||(23152422-23152464)
chr2 (799-841)||(23563679-23563721)
chr2 (606-659)||(40124259-40124312)
[»] chr6 (1 HSPs)
chr6 (799-840)||(17866078-17866119)


Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 521 - 940
Target Start/End: Complemental strand, 11713154 - 11712735
Alignment:
Q  521 ggttgatgaccaacacatggatttggaccctcttatattgagatttcatataaagagttatttgataaaccttactgttaaaatttagggtaatagtcac 620  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11713154 ggttgatgaccaacacacggatttggaccctcttatatagagatttcatataaagagttatttgataaaccttactattaaaatttagggtaatagtcac 11713055  T
Q  621 tttagttcctgaatatgtaatgagtagtcacattagtccttcaatatataaagagttatttggatcagtatcatttcaaatttgttttctttcaatataa 720  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  11713054 tttagttcctgaatatataatgagtagtcacatttgtccttcaatatataaagagttatttggatcaatatcatttcatatttgttttctttcaatataa 11712955  T
Q  721 aacctttttgaaagattgtcttggttcatgaacaatgtcttcaacctctataaattaaattgagatcaatacattttaacaacaactttcataatctcaa 820  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11712954 aacctttttgaaagattgtcttggttcatgaacaatgtcttcaacctctataaattaaattgagatcaatacattttaacaacaactttcataatctcaa 11712855  T
Q  821 ttaaaattttcaatatcacttatctctcaaaatttcatactcatagtttgtgaaactttattcatactttcaactttaataaaagtttctgagcattaag 920  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11712854 ttaaaattttcaatatcacttatctctcaaaatttcatactcatagtttgtgaaactttattcatactttcaactttaataaaagtttctgagcactaag 11712755  T
Q  921 tgttaaagtgatattgatta 940  Q
    ||||||||||||||||||||    
T  11712754 tgttaaagtgatattgatta 11712735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 8 - 474
Target Start/End: Complemental strand, 11714095 - 11713635
Alignment:
Q  8 gcacaatgccttctccttatacaactcaaactcttcatcaatttctacaggaaaaggagaatttaatagggcgagtgaagacaagggcaatgaataaaga 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11714095 gcacaatgccttctccttatacaactcaaactcttcatcaatttctacaggaaaaggagaatttaatagggcaagtgaagacaagggcaatgaataaaga 11713996  T
Q  108 gttatagtggcatttgttgtagatgtagatatagttnnnnnnnnnnnnnnnntacatacactcaagcaaacatgcatgtcattttaattaataattagtc 207  Q
    ||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||| ||||    
T  11713995 gttatagtggcatttgttgtagatgtagatatagttcacacacacac------acatacactcaagcaaacatgcatgtcattttaattaataatcagtc 11713902  T
Q  208 ttactggaacaaatgaagcatgttaaagtgtaattgnnnnnnnntttaattggaagagaannnnnnnngttaagtaaagaatcctttaactacattttgt 307  Q
    ||||||||||||||||||||||||||||||||||||         ||||||||||||| |        ||||||||||||||||||||||||||||||||    
T  11713901 ttactggaacaaatgaagcatgttaaagtgtaattgaaaaatttcttaattggaagagtattttttttgttaagtaaagaatcctttaactacattttgt 11713802  T
Q  308 aaatttagattgctacatcaataaagaacagagttggcaacttcattcttctttatttatgttttaagatttgaattatgtgggaagggttttattaatt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  11713801 aaatttagattgctacatcaataaagaacagagttggcaacttcattcttctttatttatgttttaaaaattgaattatgtgggaagggttttattaatt 11713702  T
Q  408 gagtcctggtagtatttgaaaagttgaagtcccacacaaatagttttttatcttctaaacaagtgat 474  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||    
T  11713701 gagtcctggtagtatttgaaaatttaaagtcccacacaaatagttttttatcttttaaacaagtgat 11713635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 601 - 665
Target Start/End: Original strand, 4161612 - 4161676
Alignment:
Q  601 aaatttagggtaatagtcactttagttcctgaatatgtaatgagtagtcacattagtccttcaat 665  Q
    ||||| ||||||||||||||||| || ||  ||| ||||||||||||||||| ||||||||||||    
T  4161612 aaattaagggtaatagtcactttcgtccccaaatgtgtaatgagtagtcacaatagtccttcaat 4161676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 799 - 841
Target Start/End: Original strand, 29896761 - 29896803
Alignment:
Q  799 acaacaactttcataatctcaattaaaattttcaatatcactt 841  Q
    |||||||||||||| ||||||||| | ||||||||||||||||    
T  29896761 acaacaactttcattatctcaattgatattttcaatatcactt 29896803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 608 - 665
Target Start/End: Original strand, 17381281 - 17381338
Alignment:
Q  608 gggtaatagtcactttagttcctgaatatgtaatgagtagtcacattagtccttcaat 665  Q
    |||||||||||| ||| |||||||||| ||||   |||||||||| ||||||||||||    
T  17381281 gggtaatagtcattttggttcctgaatgtgtagcaagtagtcacaatagtccttcaat 17381338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 614 - 659
Target Start/End: Complemental strand, 47463966 - 47463921
Alignment:
Q  614 tagtcactttagttcctgaatatgtaatgagtagtcacattagtcc 659  Q
    |||||||||||||||||||||| | ||||||| ||||| |||||||    
T  47463966 tagtcactttagttcctgaataggaaatgagtcgtcactttagtcc 47463921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 610 - 658
Target Start/End: Complemental strand, 30843911 - 30843863
Alignment:
Q  610 gtaatagtcactttagttcctgaatatgtaatgagtagtcacattagtc 658  Q
    |||||||||||||| |||||||||| ||||||||||||||||| |||||    
T  30843911 gtaatagtcactttggttcctgaatgtgtaatgagtagtcacaatagtc 30843863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 769 - 841
Target Start/End: Complemental strand, 25536152 - 25536076
Alignment:
Q  769 tataaattaaattgaga-tcaatacatttta---acaacaactttcataatctcaattaaaattttcaatatcactt 841  Q
    |||||||| |||||||| |||| ||||||||   ||||||||||||||  |||||||| | ||||||||||||||||    
T  25536152 tataaattcaattgagaatcaaaacattttatacacaacaactttcattctctcaattgacattttcaatatcactt 25536076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 608 - 650
Target Start/End: Complemental strand, 46848479 - 46848437
Alignment:
Q  608 gggtaatagtcactttagttcctgaatatgtaatgagtagtca 650  Q
    |||||||||||||||| || ||||||| |||||||||||||||    
T  46848479 gggtaatagtcactttggtccctgaatgtgtaatgagtagtca 46848437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 608 - 672
Target Start/End: Original strand, 3047762 - 3047826
Alignment:
Q  608 gggtaatagtcactttagttcctgaatatgtaatgagtagtcacattagtccttcaatatataaa 672  Q
    |||||||| |||||||  || |||||| || |||||||||||||| |||||||||||| ||||||    
T  3047762 gggtaataatcactttcattactgaatgtgcaatgagtagtcacaatagtccttcaatgtataaa 3047826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 608 - 665
Target Start/End: Complemental strand, 34177594 - 34177537
Alignment:
Q  608 gggtaatagtcactttagttcctgaatatgtaatgagtagtcacattagtccttcaat 665  Q
    |||||||||||| ||| || ||||||| ||||||||||||  ||| ||||||||||||    
T  34177594 gggtaatagtcattttggtccctgaatgtgtaatgagtagctacaatagtccttcaat 34177537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 608 - 665
Target Start/End: Complemental strand, 35684998 - 35684941
Alignment:
Q  608 gggtaatagtcactttagttcctgaatatgtaatgagtagtcacattagtccttcaat 665  Q
    |||| ||||||||||| || ||||||| || |||||||||| ||| ||||||||||||    
T  35684998 gggttatagtcactttggtccctgaatgtgcaatgagtagttacaatagtccttcaat 35684941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 608 - 665
Target Start/End: Original strand, 45392285 - 45392342
Alignment:
Q  608 gggtaatagtcactttagttcctgaatatgtaatgagtagtcacattagtccttcaat 665  Q
    |||||||||||| |||  ||||||||| ||||||||||||||| | |||||| |||||    
T  45392285 gggtaatagtcattttgattcctgaatgtgtaatgagtagtcaaaatagtccctcaat 45392342  T

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Target: scaffold0329 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 611 - 665
Target Start/End: Complemental strand, 6547 - 6493
Alignment:
Q  611 taatagtcactttagttcctgaatatgtaatgagtagtcacattagtccttcaat 665  Q
    ||||||||| |||||| ||||||| |||||||| |||||| | ||||||||||||    
T  6547 taatagtcattttagtacctgaatgtgtaatgaatagtcataatagtccttcaat 6493  T

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Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 604 - 646
Target Start/End: Complemental strand, 34034948 - 34034906
Alignment:
Q  604 tttagggtaatagtcactttagttcctgaatatgtaatgagta 646  Q
    |||||||||||||||| |||||| ||||||| |||||||||||    
T  34034948 tttagggtaatagtcattttagtccctgaatgtgtaatgagta 34034906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 608 - 665
Target Start/End: Original strand, 23159026 - 23159083
Alignment:
Q  608 gggtaatagtcactttagttcctgaatatgtaatgagtagtcacattagtccttcaat 665  Q
    ||||||||||||||||||| ||||||| |||||||| |||| | | |||||| |||||    
T  23159026 gggtaatagtcactttagtccctgaatgtgtaatgattagttataatagtccatcaat 23159083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 799 - 841
Target Start/End: Complemental strand, 23152464 - 23152422
Alignment:
Q  799 acaacaactttcataatctcaattaaaattttcaatatcactt 841  Q
    |||||||||||||| ||||||||| | ||||||||||||||||    
T  23152464 acaacaactttcattatctcaattgacattttcaatatcactt 23152422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 799 - 841
Target Start/End: Complemental strand, 23563721 - 23563679
Alignment:
Q  799 acaacaactttcataatctcaattaaaattttcaatatcactt 841  Q
    |||||||||||||| ||||||||| | ||||||||||||||||    
T  23563721 acaacaactttcattatctcaattgacattttcaatatcactt 23563679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 606 - 659
Target Start/End: Original strand, 40124259 - 40124312
Alignment:
Q  606 tagggtaatagtcactttagttcctgaatatgtaatgagtagtcacattagtcc 659  Q
    |||||||||||||||||| || | ||||| ||||| ||||||||||| ||||||    
T  40124259 tagggtaatagtcactttggtccttgaatgtgtaacgagtagtcacaatagtcc 40124312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 799 - 840
Target Start/End: Original strand, 17866078 - 17866119
Alignment:
Q  799 acaacaactttcataatctcaattaaaattttcaatatcact 840  Q
    |||||||||||||| ||||||||| | |||||||||||||||    
T  17866078 acaacaactttcattatctcaattgacattttcaatatcact 17866119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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