View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4360-Insertion-10 (Length: 473)
Name: NF4360-Insertion-10
Description: NF4360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4360-Insertion-10 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 8 - 459
Target Start/End: Complemental strand, 27476053 - 27475603
Alignment:
| Q |
8 |
ctcgatgcatcgtagagatattcttcgtcttcttattggaaactaacaatcttcttcctttttacaaggtatttggctgttgggaaaaagcgggggagga |
107 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27476053 |
ctcgatgcatcgtagagatattctccgtcttcttgttggaaactaacaatctccttcctttttacaaggtatttggctgttgggaaaaagcgggggagga |
27475954 |
T |
|
| Q |
108 |
attcttgcttcagatcatcccaagtagctatggtggcacttgttcaaatatcaatatgacgacatcaagcagaattagtgttaaagcaagcaaattacta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27475953 |
attcttgcttcagatcatcccaagtagctatggtggcacttgttcaaatatcaatatgacgacatcaagcagaattagtgttaaagcaagcaaattacta |
27475854 |
T |
|
| Q |
208 |
agcttcgtgaatattgagaagctgctagcctcccatgcataatggaaacacttaaatgtgttagattagtggc-nnnnnnnaatggcaaaatatatacat |
306 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27475853 |
agcttcgtgaatattgagaagctgctagcctcccatgcataatggaaacacttaaatgtgttagattagtggctttttttgaatggcaaaatatatacat |
27475754 |
T |
|
| Q |
307 |
agataaataaagaaatataaaagtacagaacatacaaaacagtcggcaagcgacacaccaacaaaacaccccaaaggaggaacacccccaaaacccccac |
406 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
27475753 |
agataaataaagaaatataaaagtacagaatatacaaaacagtcggcaagcgacacaccaacaaaacaccctaaaggaggaacacccccaaaa-ccccac |
27475655 |
T |
|
| Q |
407 |
aggtgaggctagaggcaccccaactaagccctaaaacgggggcaaaggacacc |
459 |
Q |
| |
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|
| T |
27475654 |
aggtgaggctagaggc-gcccaactaagccctaaaacgggggcaaaggacacc |
27475603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 141
Target Start/End: Original strand, 17555177 - 17555255
Alignment:
| Q |
62 |
ttcctttttacaaggtatttggctgttgggaaaaagcgggggaggaattcttgcttcagatcatcccaagtagctatggt |
141 |
Q |
| |
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||||||||| ||||||||||| ||||| ||||||||||| |||||||| ||| ||| | |||||| |||||||||||||| |
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| T |
17555177 |
ttccttttt-caaggtatttgactgttcggaaaaagcggcggaggaatgctttctttaaatcatctcaagtagctatggt |
17555255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 36 - 149
Target Start/End: Complemental strand, 28312901 - 28312788
Alignment:
| Q |
36 |
cttcttattggaaactaacaatcttcttcctttttacaaggtatttggctgttgggaaaaagcgggggaggaattcttgcttcagatcatcccaagtagc |
135 |
Q |
| |
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|||||| |||||||| ||| |||| |||||| ||| |||||||||| | ||| |||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
28312901 |
cttcttgttggaaaccaactatctccttcctcttttcaaggtattttgttgtaaggaaaaagcgggggaggaattctttctttagatcatcccaagtagc |
28312802 |
T |
|
| Q |
136 |
tatggtggcacttg |
149 |
Q |
| |
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| ||||| |||||| |
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|
| T |
28312801 |
tttggtgccacttg |
28312788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 13372212 - 13372139
Alignment:
| Q |
74 |
aggtatttggctgttgggaaaaagcgggggaggaattcttgcttcagatcatcccaagtagctatggtggcact |
147 |
Q |
| |
|
|||||||| ||| |||||||||||||| |||| | | | | ||||||||||| |||||||||||||||| |||| |
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| T |
13372212 |
aggtattttgctattgggaaaaagcggcggagtattgcattcttcagatcattccaagtagctatggtgccact |
13372139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 75651 - 75773
Alignment:
| Q |
12 |
atgcatcgtagagatattcttcgtcttcttattggaaactaacaatcttcttccttttta--caaggtatttggctgttgggaaaaagcgggggaggaat |
109 |
Q |
| |
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||||||| ||||||| ||||||||||| || |||||||| || |||| |||||||||| |||||||||||| ||||||||||| |||| |||||||| |
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| T |
75651 |
atgcatcctagagattttcttcgtctttttgttggaaaccgactatctccttccttttttttcaaggtatttggttgttgggaaaaggcggtggaggaat |
75750 |
T |
|
| Q |
110 |
tcttgcttcagatcatcccaagt |
132 |
Q |
| |
|
||| |||||||||||||||||| |
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|
| T |
75751 |
gctttcttcagatcatcccaagt |
75773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 25131616 - 25131749
Alignment:
| Q |
16 |
atcgtagagatattcttcgtcttcttattggaaactaacaatcttcttcctttttacaaggtatttggctgttgggaaaaagcgggggaggaattcttgc |
115 |
Q |
| |
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||||||||||| |||| ||||||||| || |||| || |||| |||||||||| |||| ||||||| | | |||||||| | |||||||| ||| | |
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| T |
25131616 |
atcgtagagattttctccgtcttcttgttagaaatcgactatctccttccttttttcaagatatttggatatcgggaaaaaacaatggaggaatgctttc |
25131715 |
T |
|
| Q |
116 |
ttcagatcatcccaagtagctatggtggcacttg |
149 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
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| T |
25131716 |
ttcagatcatcccaagtagctatggtgccacttg |
25131749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 169 - 280
Target Start/End: Complemental strand, 51745597 - 51745486
Alignment:
| Q |
169 |
acatcaagcagaattagtgttaaagcaagcaaattactaagcttcgtgaatattgagaagctgctagcctcccatgcataatggaaacacttaaatgtgt |
268 |
Q |
| |
|
||||||| || ||| |||| |||||||| |||||||| ||||||| | |||||||||| ||| | | |||||||||||||||| ||||||| ||||| | |
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| T |
51745597 |
acatcaaacaaaatcagtgctaaagcaaccaaattacaaagcttcataaatattgagatgctaccaacctcccatgcataatgaaaacactgaaatgctt |
51745498 |
T |
|
| Q |
269 |
tagattagtggc |
280 |
Q |
| |
|
|||||||||||| |
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|
| T |
51745497 |
tagattagtggc |
51745486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 36650115 - 36650167
Alignment:
| Q |
342 |
aaaacagtcggcaagcgacacaccaacaaaacaccccaaaggaggaacacccc |
394 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| ||||||| |||||||||||| |
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|
| T |
36650115 |
aaaatagtcggcaagcgacacacccgcaaaactccccaaaagaggaacacccc |
36650167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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