View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4360-Insertion-11 (Length: 423)
Name: NF4360-Insertion-11
Description: NF4360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4360-Insertion-11 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 8 - 423
Target Start/End: Original strand, 39840332 - 39840747
Alignment:
| Q |
8 |
gattcactattcattccttacacttcaattgtagctaatttaatccatgattaattgttcctttctctacttttctatcagattttaatgagatcaaaga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39840332 |
gattcactattcattccttacacttcaattgtagctaatttaatccatgattaattgttcctttctctacttttctatcagattttaatgagatcaaaga |
39840431 |
T |
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| Q |
108 |
tcctatcaaaaaggataggataaccaaatgtgccactttggcaatacaagattataattcacaaactcagaaccactaccaattggtcgttattgatgag |
207 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39840432 |
tcctatcgaaaaggataggataaccaaatgtgccactttggcaatacaagattataattcacaaactcagaaccactaccaattggtcgttattgatgag |
39840531 |
T |
|
| Q |
208 |
tttatttcgcaaatggttaatggtttcctttacattatcacatttcaagccatgaatgctgacaaggaatatgcaactttcgaagcctatgtgtatagca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39840532 |
tttatttcgcaaatggttaatggtttcctttacattatcacatttcaagccatgaatgctgacaaggaatatgcaactttcgaagcctatgtgtatagca |
39840631 |
T |
|
| Q |
308 |
aaagagatctcaggctggttattgatttcataaaggttattcaaatcaggatcaaagggaccagcacttggtaatttattttaatcttatcaccagattg |
407 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39840632 |
aaagagatctcagactggttattgatttcataaaggttattcaaatcgggatcaaagggaccagcacttggtaatttattttaatcttatcaccagattg |
39840731 |
T |
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| Q |
408 |
tttgtcattttttcaa |
423 |
Q |
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| T |
39840732 |
tttgtcattttttcaa |
39840747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 35 - 423
Target Start/End: Original strand, 35162105 - 35162490
Alignment:
| Q |
35 |
attgtagctaatttaatcc---atgattaattgttcctttctctacttttctatcagattttaatgagatcaaagatcctatcaaaaaggataggataac |
131 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
35162105 |
attgtagctaatttaatcatcgatgattaatttttcctttctctacttttctatcagattttaatgatatcaaagatcctaccaaaaaggataggataac |
35162204 |
T |
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| Q |
132 |
caaatgtgccactttggcaatacaagattataattcacaaactcagaaccactaccaattggtcgttattgatgagtttatttcgcaaatggttaatggt |
231 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||| ||| | ||||||||| |
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| T |
35162205 |
caaatgtgccactttggcaatacgggattataattcacaaactcagaacgactaccaattggtcgttgttgatacgtttacttcacaatttgttaatggt |
35162304 |
T |
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| Q |
232 |
ttcctttacattatcacatttcaagccatgaatgctgacaaggaatatgcaactttcgaagcc------tatgtgtatagcaaaagagatctcaggctgg |
325 |
Q |
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||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||| | || ||| | |||||||| || |
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| T |
35162305 |
ttcctttactgtatcacctttcaagccagcaatgctgacaaggaatatgcaactttcgaagccatagtgtttggatatggaaaaagagagttc------- |
35162397 |
T |
|
| Q |
326 |
ttattgatttcataaaggttattcaaatcaggatcaaagggaccagcacttggtaatttattttaatcttatcaccagattgtttgtcattttttcaa |
423 |
Q |
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| T |
35162398 |
-----gatttaagaaaggttattagaatcaggatcaaagggaccagtacttggtaatttattttaatcttatcaccagattgtttctcattttttcaa |
35162490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 35 - 235
Target Start/End: Complemental strand, 44631029 - 44630826
Alignment:
| Q |
35 |
attgtagctaatttaatcc---atgattaattgttcctttctctacttttctatcagattttaatgagatcaaagatcctatcaaaaaggataggataac |
131 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44631029 |
attgtagctaatttaatcatctatgattaatttttcctttctctacttttctatcagattttaatgagatcaaagatcctaccaaaaaggataggataac |
44630930 |
T |
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| Q |
132 |
caaatgtgccactttggcaatacaagattataattcacaaactcagaaccactaccaattggtcgttattgatgagtttatttcgcaaatggttaatggt |
231 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44630929 |
caaatgtgccactttggcaatacgggattataattcacaaactcagaaccactaccaattggtcgttaatgatgagtttatttcgcaaatggttaatggt |
44630830 |
T |
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| Q |
232 |
ttcc |
235 |
Q |
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|||| |
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| T |
44630829 |
ttcc |
44630826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 35 - 294
Target Start/End: Complemental strand, 44798009 - 44797747
Alignment:
| Q |
35 |
attgtagctaatttaatcc---atgattaattgttcctttctctacttttctatcagattttaatgagatcaaagatcctatcaaaaaggataggataac |
131 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44798009 |
attgtagctaatttaatcatctatgattaatttttcctttctctacttttctatcagattttaatgagatcaaagatcctaccaaaaaggataggataac |
44797910 |
T |
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| Q |
132 |
caaatgtgccactttggcaatacaagattataattcacaaactcagaaccactaccaattggtcgttattgatgagtttatttcgcaaatggttaatggt |
231 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| | ||||| ||| |
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| T |
44797909 |
caaatgtgccactttggcaatacgggattataattcacaaactcagaaccactaccaattggtcgttgttgatacgtttacttcgcgatatgttaacggt |
44797810 |
T |
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| Q |
232 |
ttcctttacattatcacatttcaagccatgaatgctgacaaggaatatgcaactttcgaagcc |
294 |
Q |
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| T |
44797809 |
ttcctttacggtatcacctttcaagccagcaatgctgacgtggaatatgcaactttcgaagcc |
44797747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 35 - 423
Target Start/End: Original strand, 39845311 - 39845714
Alignment:
| Q |
35 |
attgtagctaatttaatccatgattaattgttcctttctctacttttctatcagattttaatgagatcaaagatcctatcaaaaa------------gga |
122 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||| || ||| ||| |||| ||| |
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| T |
39845311 |
attgtagttaatttaatcgatgattaattgttcctttctctacttttctatcagattttaatcaaatcgaaaatcgaatcgaaaatcaaatcgaaaagga |
39845410 |
T |
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| Q |
123 |
taggataaccaaatgtgccactttggcaatacaagattataattcacaaactcagaaccactaccaattggtcgttattgatgagtttatttcgcaaatg |
222 |
Q |
| |
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|||| | | |||||||| |||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
39845411 |
taggcttatcaaatgtgtcactttggcaatacgggattataattcacaaactcggaacgactaccaattggtcgttaatgatgagtttatttcgcaaatg |
39845510 |
T |
|
| Q |
223 |
gttaatggtttcctttacattatcacatttcaagccatgaatgctgacaaggaatatgcaactttcgaagcctatgtgta------tagcaaaagagatc |
316 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | | ||||||||| |
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| T |
39845511 |
gttaattgtttcctttaccgtatcacatttcaagccatgaatgctgacaaggaatatgcaacttttgaagcccatgtgtatggatttggaaaaagagat- |
39845609 |
T |
|
| Q |
317 |
tcaggctggttatt--gatttcataaaggttattcaaatcaggatcaaagggaccagcacttggtaatttattttaatcttatcaccagattgtttgtca |
414 |
Q |
| |
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|| ||||| || ||| |||| || || ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39845610 |
----tatgattatttgaatctcagaaagttttttagaatcaggatggaagggaccagtacttggtaatttattttaatcttatcaccagattgtttgtca |
39845705 |
T |
|
| Q |
415 |
ttttttcaa |
423 |
Q |
| |
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||||||||| |
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| T |
39845706 |
ttttttcaa |
39845714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 339 - 423
Target Start/End: Complemental strand, 44797708 - 44797624
Alignment:
| Q |
339 |
aaaggttattcaaatcaggatcaaagggaccagcacttggtaatttattttaatcttatcaccagattgtttgtcattttttcaa |
423 |
Q |
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|||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44797708 |
aaaggttattataatcaggatggaagggaccagtacttggtaatttattttaatcttatcaccagattgtttctcattttttcaa |
44797624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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