View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4360-Insertion-12 (Length: 385)
Name: NF4360-Insertion-12
Description: NF4360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4360-Insertion-12 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 129 - 382
Target Start/End: Complemental strand, 33386136 - 33385883
Alignment:
| Q |
129 |
cctctgtatttatcaattgttccatatggttttagtttcttttcaaaatttgtttataacctatagaattgcaataagaaggcaagtgtactaaatttca |
228 |
Q |
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| T |
33386136 |
cctctgtatttatcaattgttccatatgtttttagtttcttttcaaaatttgtttataacctatagaattgcaataagaaggcaagtgtactaaatttca |
33386037 |
T |
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| Q |
229 |
ggtcttgttacactctacagaatccatcccattatttatgaactcttgccactaatatgcgtcaaaagaagacaaaagttcttggaggtttgctggatcc |
328 |
Q |
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| T |
33386036 |
ggtcttgttacactctacagaatccatcccattatttatgaactcttgccactaatatgcatcaaaagaagacaaaacttcttggaggtttgctggatcc |
33385937 |
T |
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| Q |
329 |
tcctataatgtatagaccatgtaattggactcttgccagcttcatgtttgatta |
382 |
Q |
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| T |
33385936 |
tcctataatgtatagaccatgtaattggactcttgccagcttcatgtttgatta |
33385883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 33387068 - 33386943
Alignment:
| Q |
8 |
tgaatgatctgaccaatctgaatatatggaataaaaccaatttttgcatcacgtacattggcccggttaaaagttttccaatgtcacgttttagtttctt |
107 |
Q |
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| T |
33387068 |
tgaatgatctgaccaatctgaatatatggaataaaaccaatttttgcatcacgtacattggcccggttaaaagttttccaatgtcacgttttagtttctt |
33386969 |
T |
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| Q |
108 |
ttcaaaatttgtttatatatgcctct |
133 |
Q |
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| T |
33386968 |
ttcaaaatttgtttatatatgcctct |
33386943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 186
Target Start/End: Complemental strand, 33386981 - 33386952
Alignment:
| Q |
157 |
gttttagtttcttttcaaaatttgtttata |
186 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
33386981 |
gttttagtttcttttcaaaatttgtttata |
33386952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 124
Target Start/End: Complemental strand, 33386107 - 33386079
Alignment:
| Q |
96 |
ttttagtttcttttcaaaatttgtttata |
124 |
Q |
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| T |
33386107 |
ttttagtttcttttcaaaatttgtttata |
33386079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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