View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4360-Insertion-16 (Length: 171)
Name: NF4360-Insertion-16
Description: NF4360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4360-Insertion-16 |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 3e-59; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 41556340 - 41556459
Alignment:
| Q |
7 |
atttctcatggaagaagactttgaaaaagaatacactatgttccaagattcttttgctcttcaacttactgagaaatcatttcatgatgttattgttcac |
106 |
Q |
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| T |
41556340 |
atttctcatggaagaagactttgaaaaagaatacactatgttccaagattcttttgctcttcaactcactgagaaatcatttcatgatgttattgttcac |
41556439 |
T |
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| Q |
107 |
actcctcctgctgctgctgg |
126 |
Q |
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| T |
41556440 |
actcctcctgctgctgctgg |
41556459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 41570037 - 41570143
Alignment:
| Q |
7 |
atttctcatggaagaagactttgaaaaagaatacactatgttccaagattcttttgctcttcaacttactgagaaatcatttcatgatgttattgttcac |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41570037 |
atttctcatggaagaagactttgaaaaagaatacactatgttccaagattcctttgctcttcaacttactgagaaatcatttcatgatgttattgttcac |
41570136 |
T |
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| Q |
107 |
actcctc |
113 |
Q |
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||||||| |
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| T |
41570137 |
actcctc |
41570143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 41579046 - 41579149
Alignment:
| Q |
10 |
tctcatggaagaagactttgaaaaagaatacactatgttccaagattcttttgctcttcaacttactgagaaatcatttcatgatgttattgttcacact |
109 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41579046 |
tctcatggaagaagactttgaaaaggagtacactatgttccaagattcttttactcttcaacttactgaaaaatcatttcatgatgttattgttcacact |
41579145 |
T |
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| Q |
110 |
cctc |
113 |
Q |
| |
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|||| |
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| T |
41579146 |
cctc |
41579149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 5e-42
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 41588982 - 41589088
Alignment:
| Q |
7 |
atttctcatggaagaagactttgaaaaagaatacactatgttccaagattcttttgctcttcaacttactgagaaatcatttcatgatgttattgttcac |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
41588982 |
atttctcatggaagaagactttgaaaaagagtacactcagttccaagattcttttgctcttcaacttactgaaaaatcatttcatgatgttattgctcac |
41589081 |
T |
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| Q |
107 |
actcctc |
113 |
Q |
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||||||| |
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| T |
41589082 |
actcctc |
41589088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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