View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4360-Insertion-2 (Length: 1108)
Name: NF4360-Insertion-2
Description: NF4360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4360-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 684; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 150 - 1034
Target Start/End: Complemental strand, 38407928 - 38407041
Alignment:
| Q |
150 |
atttgttgggttaactaattaatggtatctcttcattttcccttaaagaaaggaattaccttctagtttaaaatttatataatatatcaacnnnnnnnac |
249 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
38407928 |
atttgatgggttaactaattaatggtatctcttcattttcccttaaagaaaggaattactttctagtttaaaatttatataatatatcaactttttttac |
38407829 |
T |
|
| Q |
250 |
tgtttattggtcagattcctggcatggcataacttgtaatcaaagctttttagcttttgtaatttaaattatgttcattcaaa-ccactttagtattttc |
348 |
Q |
| |
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||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
38407828 |
tgtttatgggtcagattcctggcatggcataacctgtaatcaaagctttttagcttttgtaatttcaattatgttcattcaaaaccactttagtattttc |
38407729 |
T |
|
| Q |
349 |
agttcctatgtttggatatattaatcatatatattgaagggtcccaagtgagttcattgtaaacatttttgtttgaaaagattaatgcttcaagattnnn |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38407728 |
agttcctatgtttggatatattaatcatatatatttaagggtcccaagtgagttcattgtaaacatttttgtttgaaaagattaatgcttcaagattaaa |
38407629 |
T |
|
| Q |
449 |
nnnnnnnnnnnnnntccattgaaannnnnnnnnnaatggcaatatccacagaaagattaatgctaatttgtgaatcacatttggtttgcttgcttgagtg |
548 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38407628 |
aaaaaaaaaaaa--tccattgaaagattttttttaatggcaatatccacagaaagattaatgctaatttgtgaatcacattgggtttgcttgcttgagtg |
38407531 |
T |
|
| Q |
549 |
tctttctaaagaaactattagcagattctgtaagtctcttgcatcattaggcatggcccaatgctctcaaaacttactagtcttaaggactgtatttcat |
648 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
38407530 |
tctttctaaagaaactattagcagattctgtaagtctcttgcatcattaggcatagcccaatgatctcaaaacttactagtcttaaggactgtatttcat |
38407431 |
T |
|
| Q |
649 |
agcattatatcatttttctttcatatttcaagctaatattttcaaaaatatgcgaatcacacaaacctcatatttccagcttttcctcaacattgttgat |
748 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38407430 |
agcattatatcatttttctttcatatttcaagctaatattttcaaaaatatgcgaatcacacaaacctcatatttcaagcttttcctcaacattgttga- |
38407332 |
T |
|
| Q |
749 |
tccattggtatagtttattatttgatcttgttatcaaccagacctcttgttgcctaagtcacccttgagacttcaatgaggccaattggagctcaaaatg |
848 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38407331 |
tccattggtatagtttattatttgatcttgttatcaaccagacctcttgttgcctaagtcacccttgagacttcaatgaggccaattggagctcaaaatg |
38407232 |
T |
|
| Q |
849 |
cagaacaacaatttcaagcataggatgataacgcaaactgcactcgaacaatgcaaaatggcaaaattctgtgttaccaagcctacacagcacaaactat |
948 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38407231 |
cagaacaacaatttcaagcataggatgataacgcaaactgcactcgaacaatgcaaaatggcaaaattctgtgttaccaagcctacacagcacaaactat |
38407132 |
T |
|
| Q |
949 |
atatactctctagccac-aaaactatcacaaaccgtgc-atacagctgc-acgaaatct-ctgta-aaaaatctgcaataaagtttctaca |
1034 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||| ||| ||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
38407131 |
atatactctctagccacaaaaactatcacaaaccgtgcaatacagttgcaacgaaatctcctgtataaaaatctgcaataaagtttctaca |
38407041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 38408040 - 38407933
Alignment:
| Q |
8 |
tatgaaagtaaaacaaattcaatgttgaccttttcctctcattaaacttgtgttcatccccataatcctttgtatgattgtactttaacagtacagaagc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38408040 |
tatgaaagtaaaacaaattcaatgttgaccttttcctctcattaaacttgtgttcatccccataatcctttgtatgattgtactttaacagtacagaagc |
38407941 |
T |
|
| Q |
108 |
aatcagtt |
115 |
Q |
| |
|
|||||||| |
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|
| T |
38407940 |
aatcagtt |
38407933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 483 - 538
Target Start/End: Complemental strand, 38412310 - 38412255
Alignment:
| Q |
483 |
aatggcaatatccacagaaagattaatgctaatttgtgaatcacatttggtttgct |
538 |
Q |
| |
|
|||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||| |
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| T |
38412310 |
aatggcgatatccaccgaaagattaatgctgatttgtgaatcacatttagtttgct |
38412255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 400 - 445
Target Start/End: Complemental strand, 38412387 - 38412343
Alignment:
| Q |
400 |
gttcattgtaaacatttttgtttgaaaagattaatgcttcaagatt |
445 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
38412387 |
gttcattgcaaacatttttgtttg-aaagattaatgcttcaagatt |
38412343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 6e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 6e-77
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 1091517 - 1091793
Alignment:
| Q |
8 |
tatgaaagtaaaacaaattcaatgttgaccttttcctctcattaaacttgtgttcatccccataatcctttgtatgattgtactttaacagtacagaagc |
107 |
Q |
| |
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||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
1091517 |
tatgaaagttaaacaaattcattgttgaccttttcctctcattaaacctgtgttcatccccataatcctttgtatgactgtattttaacagtacagaagc |
1091616 |
T |
|
| Q |
108 |
aatcagttgtgaggaattcaacaaatattgtggaacagaagcatttgttgggttaactaattaatggtatctcttcattttcccttaaagaaaggaatta |
207 |
Q |
| |
|
|||||||| ||| || ||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| ||||| |||||| ||||||||| |
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| T |
1091617 |
aatcagttatgatgagttcaacaaataatgtggaacagaagcatttgttgagttaactaata----gtatctcttctgtttcctttaaaggaaggaatta |
1091712 |
T |
|
| Q |
208 |
ccttctagtttaaaatttatataatatatcaacnnnnnnnactgtttattggtcagattcctggcatggcataacttgtaat |
289 |
Q |
| |
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| || ||||||||||||||| ||||| |||| | |||||||| ||||| |||||||||||||| |||||||||||| |
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|
| T |
1091713 |
ctttatagtttaaaatttatgtaatacatcagc-ttttttactgtttagtggtctgattcctggcatggaataacttgtaat |
1091793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 613 - 672
Target Start/End: Complemental strand, 45057814 - 45057755
Alignment:
| Q |
613 |
tctcaaaacttactagtcttaaggactgtatttcatagcattatatcatttttctttcat |
672 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45057814 |
tctcaaaacttactagtcttaaggactgtatttcatagcattatatcctttttctttcat |
45057755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 544 - 590
Target Start/End: Complemental strand, 45058476 - 45058430
Alignment:
| Q |
544 |
gagtgtctttctaaagaaactattagcagattctgtaagtctcttgc |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
45058476 |
gagtgtctttctaaagaaactattagcagattctttaagtctcttgc |
45058430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 24543974 - 24543914
Alignment:
| Q |
11 |
gaaagtaaaacaaattcaatgttgaccttttcctctcattaaacttgtgttcatccccataa |
72 |
Q |
| |
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||||| |||||||||||||| |||| |||||||||| |||||||||| ||||||||||||| |
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|
| T |
24543974 |
gaaaggaaaacaaattcaat-ttgatcttttcctctaattaaacttgcattcatccccataa |
24543914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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