View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4360-Insertion-3 (Length: 1107)

Name: NF4360-Insertion-3
Description: NF4360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4360-Insertion-3
NF4360-Insertion-3
[»] chr2 (3 HSPs)
chr2 (600-983)||(21259995-21260380)
chr2 (598-788)||(21264574-21264764)
chr2 (110-164)||(33138630-33138684)
[»] chr3 (4 HSPs)
chr3 (599-983)||(6843115-6843501)
chr3 (601-784)||(6847720-6847903)
chr3 (241-294)||(53924087-53924140)
chr3 (111-162)||(899766-899817)
[»] chr1 (26 HSPs)
chr1 (600-983)||(47800566-47800952)
chr1 (598-784)||(47805146-47805332)
chr1 (241-431)||(35252418-35252603)
chr1 (320-431)||(35248709-35248816)
chr1 (241-371)||(35270766-35270896)
chr1 (95-167)||(35295864-35295936)
chr1 (92-166)||(35212051-35212125)
chr1 (85-167)||(35263089-35263171)
chr1 (85-167)||(35270514-35270596)
chr1 (95-162)||(8638989-8639056)
chr1 (97-164)||(35248360-35248427)
chr1 (97-167)||(35190453-35190523)
chr1 (95-164)||(35194581-35194650)
chr1 (95-164)||(35225001-35225070)
chr1 (241-294)||(35476668-35476721)
chr1 (92-148)||(34309434-34309490)
chr1 (95-167)||(35200020-35200092)
chr1 (10-161)||(35252078-35252230)
chr1 (241-372)||(35295569-35295700)
chr1 (241-283)||(35248618-35248660)
chr1 (113-167)||(35276640-35276694)
chr1 (321-425)||(35263421-35263519)
chr1 (110-165)||(35189414-35189469)
chr1 (129-167)||(35147477-35147515)
chr1 (378-416)||(35147807-35147845)
chr1 (113-163)||(35208239-35208289)
[»] chr7 (2 HSPs)
chr7 (241-341)||(38632208-38632308)
chr7 (241-427)||(38634944-38635131)


Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 600 - 983
Target Start/End: Original strand, 21259995 - 21260380
Alignment:
Q  600 tgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatagg 699  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21259995 tgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatagg 21260094  T
Q  700 tttttcacttgtatatatagaatacctttacactcttgtaataaagatttggaaagaaataaaatgagacctactctatcagtttgacatggtatcagag 799  Q
    ||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21260095 ttttttacttgtatatatagaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttgacatggtatcagag 21260194  T
Q  800 ctttcgatccaaaacctaatataactctgaaaccctaaaaattcacctccttccatggccgactctgattctaatacggaagacacatcatcgtcctcca 899  Q
    |||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21260195 cttctgatccaaaacctaatataactctgaaaccctaaaaatccacctccttccatggccgactctgattctaatacggaagacacatcatcgtcctcca 21260294  T
Q  900 tcctagctgaattgacggcgaaaatgacagaagttttgaaccgagctgcag-cccgtcacaagttaatg-taattctgatcatacg 983  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  21260295 tcctagctgaattgacggcgaaaatgacggaagttttgaaccgagctgcagccccgtcacaagttaatgttaattctgatcatacg 21260380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 598 - 788
Target Start/End: Original strand, 21264574 - 21264764
Alignment:
Q  598 agtgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaata 697  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21264574 agtgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaata 21264673  T
Q  698 ggtttttcacttgtatatatagaatacctttacactcttgtaataaagatttggaaagaaataaaatgagacctactctatcagtttgaca 788  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||    
T  21264674 ggttttttacttgtatatatagaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttgaca 21264764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 33138684 - 33138630
Alignment:
Q  110 gcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcaca 164  Q
    ||||||||||||||| || |||||||||||||| ||||||| ||| |||||||||    
T  33138684 gcttgaattgaagaattttcccatctcaatctccaaccacccatcacttctcaca 33138630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 599 - 983
Target Start/End: Original strand, 6843115 - 6843501
Alignment:
Q  599 gtgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatag 698  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6843115 gtgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatag 6843214  T
Q  699 gtttttcacttgtatatatagaatacctttacactcttgtaataaagatttggaaagaaataaaatgagacctactctatcagtttgacatggtatcaga 798  Q
     ||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  6843215 attttttacttgtatatatagaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttaacatggtatcaga 6843314  T
Q  799 gctttcgatccaaaacctaatataactctgaaaccctaaaaattcacctccttccatggccgactctgattctaatacggaagacacatcatcgtcctcc 898  Q
    ||||  ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6843315 gcttctgatccaaaacctaatataattctgaaaccctaaaaatccacctccttccatggccgactctgattctaatatggaagacacatcatcgtcctcc 6843414  T
Q  899 atcctagctgaattgacggcgaaaatgacagaagttttgaaccgagctgcag-cccgtcacaagttaatg-taattctgatcatacg 983  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||    
T  6843415 atcctagctgaattgacggcgaaaatgacggaagttttgaaccaagctgcagccccgtcacaagttaatgttaattttgatcatacg 6843501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 601 - 784
Target Start/End: Original strand, 6847720 - 6847903
Alignment:
Q  601 gttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggt 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6847720 gttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggt 6847819  T
Q  701 ttttcacttgtatatatagaatacctttacactcttgtaataaagatttggaaagaaataaaatgagacctactctatcagttt 784  Q
    |||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||    
T  6847820 tttttacttgtatatatagaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagttt 6847903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 53924140 - 53924087
Alignment:
Q  241 catactgagtatttggggacaaggcaatggtgtttatcataccttgaatttcaa 294  Q
    ||||| ||||||||||||||||| ||| |||||||||||| ||||||| |||||    
T  53924140 cataccgagtatttggggacaagacaagggtgtttatcattccttgaaattcaa 53924087  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 899817 - 899766
Alignment:
Q  111 cttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctca 162  Q
    ||||||||||| ||||  |||||||||||||| ||||||| |||||||||||    
T  899817 cttgaattgaataactctcccatctcaatctccaaccacccatcgcttctca 899766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 600 - 983
Target Start/End: Original strand, 47800566 - 47800952
Alignment:
Q  600 tgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatagg 699  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  47800566 tgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcaaaaataatttaccattatttcaatctagtaaaaatagg 47800665  T
Q  700 tttttcacttgtatatatagaatacctttacactcttgtaataaagatttggaaagaaataaaatgagacctactctatcagtttgacatggtatc-aga 798  Q
    ||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||    
T  47800666 ttttttacttgtatatatagaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttaacatggtatcaaga 47800765  T
Q  799 gctttcgatccaaaacctaatataactctgaaaccctaaaaattcacctccttccatggccgactctgattctaatacggaagacacatcatcgtcctcc 898  Q
    ||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47800766 gcttctgatccaaaacctaatataactctgaaaccctaaaaatccacctccttccatggccgactctgattctaatacggaagacacatcatcgtcctcc 47800865  T
Q  899 atcctagctgaattgacggcgaaaatgacagaagttttgaaccgagctgcag-cccgtcacaagttaatg-taattctgatcatacg 983  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| || |||||||||||||    
T  47800866 atcctagctgaattgacggcgaaaatgacggaagttttgaaccgagctgcagccccgtcacaagttaatgttagttctgatcatacg 47800952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 171; E-Value: 3e-91
Query Start/End: Original strand, 598 - 784
Target Start/End: Original strand, 47805146 - 47805332
Alignment:
Q  598 agtgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaata 697  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47805146 agtgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaata 47805245  T
Q  698 ggtttttcacttgtatatatagaatacctttacactcttgtaataaagatttggaaagaaataaaatgagacctactctatcagttt 784  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||    
T  47805246 ggttttttacttgtatatatagaatacctttacactcttgtaatgtagatttggaaagaaataaaatgagacctactgtatcagttt 47805332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 241 - 431
Target Start/End: Original strand, 35252418 - 35252603
Alignment:
Q  241 catactgagtatttggggacaaggcaatggtgtttatcataccttgaatttcaatcacaaacacatcacgaagctcaatgacttcagtgaacctatccaa 340  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||| |||||| || | |||||   ||||||    |||||||  ||||||| |||    
T  35252418 catactgagtatttggggacaaggcaatggtgtttatcataccacaaatgtcaatcccacaaacatcgtcaagctcggcaacttcaggaaacctatacaa 35252517  T
Q  341 aagtggtacacaaaagttgcaaagattagaatgaatataggaactaggagaaaagttgaaagtgattcattacatgacaaatggagtatct 431  Q
    |||| ||||| ||||| ||||||||||| |||    ||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||    
T  35252518 aagtagtaca-aaaagatgcaaagattataat----ataggaactgggagaaaagttgaaagtgattcattaaatgacaaatggagaatct 35252603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 320 - 431
Target Start/End: Original strand, 35248709 - 35248816
Alignment:
Q  320 gacttcagtgaacctatccaaaagtggtacacaaaagttgcaaagattagaatgaatataggaactaggagaaaagttgaaagtgattcattacatgaca 419  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||     |||||||||||| |||||||||||||||||| ||||||| ||||||    
T  35248709 gacttcagtgaacctatccaaaagtagtacaaaaaagttgcaaagatta----taatataggaactgggagaaaagttgaaagtggttcattaaatgaca 35248804  T
Q  420 aatggagtatct 431  Q
    ||||||||||||    
T  35248805 aatggagtatct 35248816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 241 - 371
Target Start/End: Original strand, 35270766 - 35270896
Alignment:
Q  241 catactgagtatttggggacaaggcaatggtgtttatcataccttgaatttcaatcacaaacacatcacgaagctcaatgacttcagtgaacctatccaa 340  Q
    |||| |||||||||||||||| | | ||||||||||||| ||| |||||||||| |  | ||||||||  ||||| |  |||||||| |||||| |||||    
T  35270766 catattgagtatttggggacaggacgatggtgtttatcacaccatgaatttcaagccaacacacatcaacaagcttagcgacttcagggaacctgtccaa 35270865  T
Q  341 aagtggtacacaaaagttgcaaagattagaa 371  Q
    |||| ||||||| ||| ||||||||||||||    
T  35270866 aagtagtacacagaagatgcaaagattagaa 35270896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 35295936 - 35295864
Alignment:
Q  95 ttcttcatcttctaagcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcacacta 167  Q
    |||||||||| |||||| ||||||||||||||  |||||||||||||| ||||||| ||| ||||||||||||    
T  35295936 ttcttcatctactaagcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcacacta 35295864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 35212051 - 35212125
Alignment:
Q  92 gatttcttcatcttctaagcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcacact 166  Q
    ||||||||||||||| | ||| |||||||||||||  |||||||||||||| ||||||| ||| |||||||||||    
T  35212051 gatttcttcatcttcaaggctagaattgaagaactctcccatctcaatctccaaccacccatcacttctcacact 35212125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 35263089 - 35263171
Alignment:
Q  85 tcatctagatttcttcatcttctaagcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcacacta 167  Q
    |||||| || |||||||| ||||| || |||| |||||||||  |||||||||||||| ||||||| ||||||||||||||||    
T  35263089 tcatctggacttcttcattttctatgcctgaactgaagaactcccccatctcaatctccaaccacccatcgcttctcacacta 35263171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 35270514 - 35270596
Alignment:
Q  85 tcatctagatttcttcatcttctaagcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcacacta 167  Q
    |||||| || |||||||| ||||| || ||||||||||||||  |||||||||||||| ||||||| ||| ||||||||||||    
T  35270514 tcatctggacttcttcattttctatgcctgaattgaagaactcccccatctcaatctccaaccacccatcacttctcacacta 35270596  T

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Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 8638989 - 8639056
Alignment:
Q  95 ttcttcatcttctaagcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctca 162  Q
    ||||||||||||||||| ||||||||||||||  ||||||||| |||| ||||||| ||| |||||||    
T  8638989 ttcttcatcttctaagcctgaattgaagaactctcccatctcagtctccaaccacccatcacttctca 8639056  T

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Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 164
Target Start/End: Original strand, 35248360 - 35248427
Alignment:
Q  97 cttcatcttctaagcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcaca 164  Q
    |||||| ||||| || | ||||||||||||  |||||||||||||||||||||| |||||||||||||    
T  35248360 cttcattttctaggcctaaattgaagaactcccccatctcaatctcaaaccacccatcgcttctcaca 35248427  T

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Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 35190453 - 35190523
Alignment:
Q  97 cttcatcttctaagcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcacacta 167  Q
    |||||||||||| || ||||||||||||||  || ||||||||||| ||||||| ||| ||||||||||||    
T  35190453 cttcatcttctaggcctgaattgaagaactctccgatctcaatctccaaccacccatcacttctcacacta 35190523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 35194581 - 35194650
Alignment:
Q  95 ttcttcatcttctaagcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcaca 164  Q
    |||||||||||| | ||||| |||||||||||  ||||| |||||||| ||||||| |||||||||||||    
T  35194581 ttcttcatcttcaaggcttggattgaagaactcccccatttcaatctccaaccacccatcgcttctcaca 35194650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 35225001 - 35225070
Alignment:
Q  95 ttcttcatcttctaagcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcaca 164  Q
    |||||||||||||| || |||| |||||||||  |||||||||||||| ||||| | |||||||||||||    
T  35225001 ttcttcatcttctaggcctgaaatgaagaactctcccatctcaatctctaaccagccatcgcttctcaca 35225070  T

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Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 35476668 - 35476721
Alignment:
Q  241 catactgagtatttggggacaaggcaatggtgtttatcataccttgaatttcaa 294  Q
    |||||||||||||||||||||||||| ||||||||||| | || ||||||||||    
T  35476668 catactgagtatttggggacaaggcattggtgtttatctttccatgaatttcaa 35476721  T

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Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 34309434 - 34309490
Alignment:
Q  92 gatttcttcatcttctaagcttgaattgaagaacttgcccatctcaatctcaaacca 148  Q
    ||||||||||||||| | |||||||||||||||||  |||||||||||||| |||||    
T  34309434 gatttcttcatcttcaaggcttgaattgaagaactctcccatctcaatctccaacca 34309490  T

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Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 35200020 - 35200092
Alignment:
Q  95 ttcttcatcttctaagcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcacacta 167  Q
    |||||||||||||  || ||||||||||||||  || || |||||||| ||||||| ||||||||||||||||    
T  35200020 ttcttcatcttcttcgcctgaattgaagaactccccgatttcaatctccaaccacccatcgcttctcacacta 35200092  T

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Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 35252078 - 35252230
Alignment:
Q  10 tacttgggcctaacttctattccttcaagtaagaggcgtgttttcctacaaatatccattatattgacattaatat-catctagatttcttcatcttcta 108  Q
    ||||| |||||| ||||||||||||||| ||| || | ||| |||  | ||  |||| |||| | |||||||| || ||| | ||||||||||| |||||    
T  35252078 tacttaggcctagcttctattccttcaactaaaagacatgtgttcagaaaaccatcctttatctcgacattaacattcatttggatttcttcatattcta 35252177  T
Q  109 agcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctc 161  Q
     || | ||||||||||||  || ||||||||||||||||||| ||| ||||||    
T  35252178 tgcctaaattgaagaactccccaatctcaatctcaaaccacccatcacttctc 35252230  T

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Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 372
Target Start/End: Complemental strand, 35295700 - 35295569
Alignment:
Q  241 catactgagtatttggggacaaggcaatggtgtttatcataccttgaatttcaatcacaaacacatcacgaagctcaatgacttcagtgaacctatccaa 340  Q
    |||| |||||||||||||||||||||  |||||||||||| ||  ||||||||| |   | |||| |||||||||||   ||||| | |||||| |||||    
T  35295700 catattgagtatttggggacaaggcaggggtgtttatcatcccacgaatttcaagccatagcacagcacgaagctcagcaacttcggggaacctgtccaa 35295601  T
Q  341 aagtggtacacaaaagttgcaaagattagaat 372  Q
    || | ||   |||||||||||||||| |||||    
T  35295600 aatttgtgtgcaaaagttgcaaagataagaat 35295569  T

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Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 35248618 - 35248660
Alignment:
Q  241 catactgagtatttggggacaaggcaatggtgtttatcatacc 283  Q
    ||||||||||||||||||||||| |||||||||||||| ||||    
T  35248618 catactgagtatttggggacaagtcaatggtgtttatcctacc 35248660  T

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Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 35276640 - 35276694
Alignment:
Q  113 tgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcacacta 167  Q
    ||||||||||||||  |||||||||||||| ||||||| ||| ||||||||||||    
T  35276640 tgaattgaagaactcccccatctcaatctccaaccacccatctcttctcacacta 35276694  T

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Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 321 - 425
Target Start/End: Original strand, 35263421 - 35263519
Alignment:
Q  321 acttcagtgaacctatccaaaagtggtacacaaaagttgcaaagattagaatgaatataggaactaggagaaaagttgaaagtgattcattacatgacaa 420  Q
    ||||||| |||||| | ||||||| ||||||||||| |||||||||||    ||| |||  ||||  ||||||||||||||||| || |||||||||||     
T  35263421 acttcagggaacctgttcaaaagtagtacacaaaagatgcaaagatta----gaacataataact--gagaaaagttgaaagtgttttattacatgacag 35263514  T

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Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 35189414 - 35189469
Alignment:
Q  110 gcttgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcacac 165  Q
    |||||||||||||||||  |||||  ||||||| ||||||||||| ||||||||||    
T  35189414 gcttgaattgaagaactcccccattccaatctccaaccacctatcacttctcacac 35189469  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 35147477 - 35147515
Alignment:
Q  129 cccatctcaatctcaaaccacctatcgcttctcacacta 167  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  35147477 cccatctcaatctccaaccacccatcgcttctcacacta 35147515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 416
Target Start/End: Original strand, 35147807 - 35147845
Alignment:
Q  378 taggaactaggagaaaagttgaaagtgattcattacatg 416  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  35147807 taggaactaagagaaaagctgaaagtgattcattacatg 35147845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 35208239 - 35208289
Alignment:
Q  113 tgaattgaagaacttgcccatctcaatctcaaaccacctatcgcttctcac 163  Q
    ||||||||||||||  || ||||||||||| ||||||| ||||||||||||    
T  35208239 tgaattgaagaactccccaatctcaatctccaaccacccatcgcttctcac 35208289  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 341
Target Start/End: Original strand, 38632208 - 38632308
Alignment:
Q  241 catactgagtatttggggacaaggcaatggtgtttatcataccttgaatttcaatcacaaacacatcacgaagctcaatgacttcagtgaacctatccaa 340  Q
    |||||||||||||| | ||||||||||  |||| |||| | ||  ||||||||| |  |||||||||||||||||||   ||||||| |||||| |||||    
T  38632208 catactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcgaaaacacatcacgaagctcagcaacttcagggaacctgtccaa 38632307  T
Q  341 a 341  Q
    |    
T  38632308 a 38632308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 427
Target Start/End: Original strand, 38634944 - 38635131
Alignment:
Q  241 catactgagtatttggggacaaggcaatggtgtttatcataccttgaatttcaatcacaaacacatcacgaagctcaatgacttcagtgaacctatccaa 340  Q
    |||||||||||||| ||||||||  ||  ||||||||  | ||  ||||||||| |  |||| ||| ||||| |||||  ||||||| |||||| |||||    
T  38634944 catactgagtatttcgggacaagtaaagagtgtttattcttccacgaatttcaagcgaaaacgcattacgaatctcaacaacttcagggaacctgtccaa 38635043  T
Q  341 aagtggtacacaaaagttgcaaagattaga-atgaatataggaactaggagaaaagttgaaagtgattcattacatgacaaatggagt 427  Q
    || | || |||||||||||||| |||  || |||| || | |||||  || ||||||||||||| ||||||   || |||||||||||    
T  38635044 aatttgtgcacaaaagttgcaatgatatgatatgattacaagaactgagaaaaaagttgaaagtaattcataggatcacaaatggagt 38635131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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