View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4360-Insertion-5 (Length: 610)
Name: NF4360-Insertion-5
Description: NF4360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4360-Insertion-5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 8 - 610
Target Start/End: Complemental strand, 24691060 - 24690458
Alignment:
| Q |
8 |
ataactttagattcatggttatacgtatttccttctaaaaagataaaactaaatattcgagatgggactctttatgaatggctatattgacagcaaacag |
107 |
Q |
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| T |
24691060 |
ataactttagattcatggttatacgtatttccttctaaaaagataaaactaaatattcgagatgggactctttatgaatggctatattgacagcaaacag |
24690961 |
T |
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| Q |
108 |
ggtcnnnnnnnggctgtttctccttctaaagcttcacatattttaattaggaccttttattctcacacaataaatcaaacaggattattgaatttctgaa |
207 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24690960 |
ggtctttttttggctgtttctccttctaaagcttcacatattttaattaggaccttttattctcacacaataaatcaaacaggattattgaatttctgaa |
24690861 |
T |
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| Q |
208 |
ttgaattagttttgaatgtcaagttgatattttatatccattatacaatcactctcaacattgaccatccctcccctccaaagttttatgaccttgacat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24690860 |
ttgaattagttttgaatgtcaagttgatattttatatccattatacaatcactctcaacattgaccatccctcccctccaaagttttatgaccttgacat |
24690761 |
T |
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| Q |
308 |
tttcttaggtagcgagctcacttggttcaaggtgatgcaccatgtaaaggttgcaccaaggcaaagtcaaactgatggtccttgctctgaagtgtgaatc |
407 |
Q |
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| T |
24690760 |
tttcttaggtagcgagctcacttggttcaaggtgatgcaccatgtaaaggttgcaccaaggcaaagtcaaactgatggtccttgctctgaagtgtgaatc |
24690661 |
T |
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| Q |
408 |
agtggtatggaccagttcttaagatcaactcttcgcaatgtgagtgcagtaatcatcagaccatcactgcgcaggcctagatgaccagtatgaatattat |
507 |
Q |
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| T |
24690660 |
agtggtatggaccagttcttaagatcaactcttcgcaatgtgagtgcagtaatcatcagaccatcactgcgcaggcctagatgaccagtatgaatattat |
24690561 |
T |
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| Q |
508 |
gaggttcagtatgcagatcatggatcttcagttcactaacaaagttacactgaaatattatttgttttgatgactctcgaagtccacatgatgctattgt |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24690560 |
gaggttcagtatgcagatcatggatcttcagttcactaacaaagttacactgaaatattatttgttttgatgactctcgaagtccacatgatgctattgt |
24690461 |
T |
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| Q |
608 |
tgt |
610 |
Q |
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||| |
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| T |
24690460 |
tgt |
24690458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 282 - 378
Target Start/End: Complemental strand, 10330785 - 10330688
Alignment:
| Q |
282 |
cctccaaagttttatgaccttgacattttcttaggtagcgagctcacttgg-ttcaaggtgatgcaccatgtaaaggttgcaccaaggcaaagtcaaa |
378 |
Q |
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||||||||| ||||||||||||| || || |||||| || ||||||||| |||| ||||||||||||||||||||||||| |||| ||||||||| |
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| T |
10330785 |
cctccaaagctttatgaccttgatatcgactcaggtagtgacctcacttgggttcagtgtgatgcaccatgtaaaggttgcactaaggtaaagtcaaa |
10330688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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