View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4360-Insertion-6 (Length: 598)
Name: NF4360-Insertion-6
Description: NF4360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4360-Insertion-6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 8 - 598
Target Start/End: Original strand, 473152 - 473743
Alignment:
| Q |
8 |
aaaatcacatttgtggacaaaatcaattcttattgagaaccacccaataacaatatcaaacgagtcttcagaatcactttagaatgaacttaatctgggt |
107 |
Q |
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| T |
473152 |
aaaatcacatttgtggacaaaatcaattcttattgagaaccacccaataacaatatcaaacgagtcttcagaatcactttagaatgaacttaatctgagt |
473251 |
T |
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| Q |
108 |
gaagtaattatccgaattgattaaaagctatgtttcgctaatttttggaatgaaaaaactgtgaaaatattaaatttgagttgcagtttaggtctaaaca |
207 |
Q |
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| T |
473252 |
gaagtaattatccgaagtgattaaaagctatgtttcactaatttttggaatgaaaaaactgtgaaaatattaaatttgagttgcagttttggtctaaaca |
473351 |
T |
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| Q |
208 |
ttaagaacactattttcaggtgctttgtgagcttcctgaatcatatgaagcttataagaaacaacaacatcgatggcattccggtccgatgcaactcttt |
307 |
Q |
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| T |
473352 |
ttaagaacattattttcaggtgctttgtgagcttcctgaatcatatgaagcttataagaaacaacaacatcgatggcattccggtccgatgcaactcttt |
473451 |
T |
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| Q |
308 |
cgtttgtgccttccagcgatcataacctctaaggtaaagtatttttgtttcattgtttcccattgcacaatttccacgg-nnnnnnnnnnnnnncaatct |
406 |
Q |
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| T |
473452 |
cgtttgtgccttccagcgatcataacctctaaggtaaagtatttttgtttcattgtttcccattgcacaatttccacggaaaaaaaataaaaaacaatct |
473551 |
T |
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| Q |
407 |
aagcattttttggttttcatattattgcagattgcattctggaagaaaacaaatcttatttttctattctttctacttagaaagctcatcctcccattct |
506 |
Q |
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| T |
473552 |
aagcattttttggttttcatattattgcagattgcattctggaagaaaacaaatcttatttttctattctttctacttagaaagctcatcctcccattct |
473651 |
T |
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| Q |
507 |
attctttcacattattctgcatcattcttccattaacaatgtttgttcccgaagccgagcttcctatttgggttatatgttacattcctgta |
598 |
Q |
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| T |
473652 |
attctttcacattattctgcatcattcttccattaacaatgtttgttcccgaagccgagcttcctatttgggttatatgttacattcctgta |
473743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 2023161 - 2023222
Alignment:
| Q |
242 |
cctgaatcatatgaagcttataagaaacaacaacatcgatggcattccggtccgatgcaact |
303 |
Q |
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| T |
2023161 |
cctgaatcttatgaagcttacaagaaacaacaacatcgttggcattctggtcctatgcaact |
2023222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 324
Target Start/End: Complemental strand, 50402932 - 50402829
Alignment:
| Q |
221 |
tttcaggtgctttgtgagcttcctgaatcatatgaagcttataagaaacaacaacatcgatggcattccggtccgatgcaactctttcgtttgtgccttc |
320 |
Q |
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| T |
50402932 |
tttcaggtactttgtgaagttcctgagtcatatgaagcttacaggaagcagcaacaccgctggcattcagggcctatgcaactttttaggctgtgtcttc |
50402833 |
T |
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| Q |
321 |
cagc |
324 |
Q |
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| T |
50402832 |
cagc |
50402829 |
T |
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