View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4360-Insertion-7 (Length: 590)
Name: NF4360-Insertion-7
Description: NF4360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4360-Insertion-7 |
 | |
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| [»] scaffold0096 (3 HSPs) |
| | |
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| [»] scaffold0446 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 543; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 8 - 582
Target Start/End: Complemental strand, 10624884 - 10624310
Alignment:
| Q |
8 |
gcaccaacctgaaaatgtgaacgatcccagtggttcacactggctccttggtgcattattccttctcattggttgtgctggcttctctgcattttacatt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10624884 |
gcaccaacctgaaaatgtgaacgatcccagtggttcacactggctccttggtgcattattccttctcattggttgtgctggcttctctgcattttacatt |
10624785 |
T |
|
| Q |
108 |
ttacaagtaagttcacatatacatattagaaccacaaacttatactttaaacaaataatgtctatagtcgttaaagtttcaaatgatttttaaatattgg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10624784 |
ttacaagtaagttcacatatacatattagaaccacaaacttatactttaaccaaataatgtctatagtcgttaaagtttcaaatgatttttaaatattgg |
10624685 |
T |
|
| Q |
208 |
tttcgacccgactaaacaatttctaatcaattccaggctataacattgagaaagtatccagcagagatgtcactagccacgtgggtttgctttattggtg |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
10624684 |
tttcgacccgactaaacaatttctaatcaattgcaggctataacattgagaaagtatccagcagagatgtcactggccacgtgggtttgctttattggtg |
10624585 |
T |
|
| Q |
308 |
cacttcaaagcagtgctgtaactattttcatggagcgcaaacatcctgaagcctggtctttgggcatggactctagactctttgcttcattatatgcggt |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
10624584 |
cacttcaaagcagtgctgtaactattttcatggagcgcaaacatcctgaagcctggtctttgggcctggactctagactctttgcttcagtatatgcggt |
10624485 |
T |
|
| Q |
408 |
tagtaacaattttcaataaggaaattgctctttaggcacctatcaagtgctgaattgtagttagctaccatttgacaatgagtttgaggtgcttgtgagt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10624484 |
tagtaacaattttcaataaggaaattgctctttaggcacctatcaagtgctgaattgtagttagctaccattcgacaatgagtttgaggtgcttgtgagt |
10624385 |
T |
|
| Q |
508 |
aattgttgggtgcctaaagagcaatgacctatcaataatgggccaatgatcccatctacactcgcacacccaact |
582 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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|
| T |
10624384 |
aattgttgggtgcctaaagagcaatgacctatcaataatgtgtcaatgatcccatctacactcgcacacccaact |
10624310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 150 - 585
Target Start/End: Original strand, 21095186 - 21095621
Alignment:
| Q |
150 |
tactttaaacaaataatgtctatagtcgttaaagtttcaaatgatttttaaatattggtttcgaccc-gactaaacaatttctaatcaattccaggctat |
248 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||||||||| || ||||| ||||| | ||||||||| || |||||||| || ||||||| ||||| | |
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|
| T |
21095186 |
tacttttaacaaatgatgtctattgtcgttaaagtttcgaacaattttcaaatacag-tttcgaccctgaataaacaatctcatatcaattgcaggccac |
21095284 |
T |
|
| Q |
249 |
aacattgagaaagtatccagcagagatgtcactagccacgtgggtttgctttattggtgcacttcaaagcagtgctgtaactattttcatggagcgcaaa |
348 |
Q |
| |
|
| |||||||||||||||||||| | |||||| ||||||| |||||||||||| ||||||||||||||||| || |||||||||||| |||||||||||| |
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|
| T |
21095285 |
atcattgagaaagtatccagcaaatatgtcattagccacatgggtttgctttgttggtgcacttcaaagctttgttgtaactattttaatggagcgcaaa |
21095384 |
T |
|
| Q |
349 |
catcctgaagcctggtctttgggcatggactctagactctttgcttcattatatgcggttagtaacaattttcaataaggaaattgctctttaggcacct |
448 |
Q |
| |
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|| |||||||| |||||||||||| || ||||||||||||||||| || |||| ||||||||||||||||||||||||||| ||||||| ||||| |||| |
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|
| T |
21095385 |
caccctgaagcttggtctttgggcctgaactctagactctttgctccagtatacgcggttagtaacaattttcaataaggacattgctcattaggaacct |
21095484 |
T |
|
| Q |
449 |
atcaagtgctgaattgtagttagctaccatttgacaatgagtttgaggtgcttgtgagtaattgttgggtgcctaaagagcaatgacctatcaataatgg |
548 |
Q |
| |
|
|||||| | || ||||||| ||||| || |||||||| ||||||||| |||||| ||||||| ||| ||||| ||||||||| |||||||||||| |
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| T |
21095485 |
atcaagggtcaaacggtagttatctaccgttagacaatgaatttgaggtgtttgtgaacaattgttatgtgtctaaaaagcaatgacttatcaataatgg |
21095584 |
T |
|
| Q |
549 |
gccaatgatcccatctacactcgcacacccaactcaa |
585 |
Q |
| |
|
| |||||| ||||||| ||| || ||||||||||| |
|
|
| T |
21095585 |
gtcaatgaacccatctgaactaacagacccaactcaa |
21095621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 388 - 589
Target Start/End: Complemental strand, 21087689 - 21087489
Alignment:
| Q |
388 |
tttgcttcattatatgcggttagtaacaattttcaataaggaaattgctctttaggcacctatcaagtgctgaattgtagttagctaccatttgacaatg |
487 |
Q |
| |
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||||||||| |||| ||| ||||||||||||||||||||||| ||||||| |||||||||||||||| |||||| ||||||| |||||||| |||| |
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| T |
21087689 |
tttgcttcagtatacgcgattagtaacaattttcaataaggacattgctcattaggcacctatcaagggctgaacggtagttatctaccattcaacaaca |
21087590 |
T |
|
| Q |
488 |
agtttgaggtgcttgtgagtaattgttgggtgcctaaagagcaatgacctatcaataatgggccaatgatcccatctacactcgcacacccaactcaatt |
587 |
Q |
| |
|
| |||||| || |||||| ||||||| | | ||||| |||||||||||||||||||||||||||||| ||||||| ||| || ||||||||||||| |
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| T |
21087589 |
aatttgagttgtttgtgaacaattgttatg-gtctaaaaagcaatgacctatcaataatgggccaatgaccccatctgaactaacaaacccaactcaatt |
21087491 |
T |
|
| Q |
588 |
tt |
589 |
Q |
| |
|
|| |
|
|
| T |
21087490 |
tt |
21087489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 409 - 589
Target Start/End: Complemental strand, 20771072 - 20770894
Alignment:
| Q |
409 |
agtaacaattttcaataaggaaattgctctttaggcacctatcaagtgctgaattgtagttagctaccatttgacaatgagtttgaggtgcttgtgagta |
508 |
Q |
| |
|
||||||||||| ||||||||| ||||||| |||||||||||||||| || ||| ||||||| ||||| || |||| | |||||| || |||||| | |
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|
| T |
20771072 |
agtaacaattt-caataaggacattgctcattaggcacctatcaagggccgaacggtagttatctaccgttcaacaacaaatttgagttgtttgtgaaca |
20770974 |
T |
|
| Q |
509 |
attgttgggtgcctaaagagcaatgacctatcaataatgggccaatgatcccatctacactcgcacacccaactcaatttt |
589 |
Q |
| |
|
|||||| | | ||||| |||||||||||||||||||||||||||||| ||||||| ||| || ||||||||||||||| |
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|
| T |
20770973 |
attgttatg-gtctaaaaagcaatgacctatcaataatgggccaatgagcccatctgaactaacaaacccaactcaatttt |
20770894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 21094903 - 21094953
Alignment:
| Q |
8 |
gcaccaacctgaaaatgtgaacgatcccagtggttcacactggctccttgg |
58 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
21094903 |
gcaccaacctgaaaatgtgaacgatcccactggtgcacactggctccttgg |
21094953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 126; Significance: 1e-64; HSPs: 3)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 144 - 416
Target Start/End: Complemental strand, 45560 - 45288
Alignment:
| Q |
144 |
aacttatactttaaacaaataatgtctatagtcgttaaagtttcaaatgatttttaaatattggtttcgaccc-gactaaacaatttctaatcaattcca |
242 |
Q |
| |
|
||||| |||||| ||||||| |||||||| || ||||||||||| || ||||| ||||| | ||||||||| || |||||||| ||| ||||||| || |
|
|
| T |
45560 |
aacttctacttttaacaaatgatgtctattgttgttaaagtttcgaacaattttcaaatacag-tttcgaccctgaataaacaatctcttatcaattgca |
45462 |
T |
|
| Q |
243 |
ggctataacattgagaaagtatccagcagagatgtcactagccacgtgggtttgctttattggtgcacttcaaagcagtgctgtaactattttcatggag |
342 |
Q |
| |
|
||| | | |||||||||||||||||||| | |||||| ||||||| |||||||||||| |||||||||||||||||| || |||||||||| | |||||| |
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|
| T |
45461 |
ggccacatcattgagaaagtatccagcaaatatgtcattagccacatgggtttgctttgttggtgcacttcaaagcactgttgtaactattgtaatggag |
45362 |
T |
|
| Q |
343 |
cgcaaacatcctgaagcctggtctttgggcatggactctagactctttgcttcattatatgcggttagtaacaa |
416 |
Q |
| |
|
|||||||| |||||| | |||||||||||| |||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
45361 |
cgcaaacaccctgaaacttggtctttgggcctggactctagactctttgctccagtatatgcggttagtaacaa |
45288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 46083 - 45964
Alignment:
| Q |
12 |
caacctgaaaatgtgaacgatcccagtggttcacactggctccttggtgcattattccttctcattggttgtgctggcttctctgcattttacattttac |
111 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||| ||||| || || | |||||||||| ||| ||||||| || |||||||||| |
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|
| T |
46083 |
caacctgaaaatgtgaacgatcccactggtgcacactggctccttggagcattgtttctcgtaattggttgtgttggaatctctgccttctacattttac |
45984 |
T |
|
| Q |
112 |
aagtaagttcacatatacata |
132 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
45983 |
aagtaag-tcacatatacata |
45964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 508 - 589
Target Start/End: Complemental strand, 44398 - 44317
Alignment:
| Q |
508 |
aattgttgggtgcctaaagagcaatgacctatcaataatgggccaatgatcccatctacactcgcacacccaactcaatttt |
589 |
Q |
| |
|
||||||| ||| ||||| ||||||||| |||||||||||||||||||| ||||||| ||| || ||||||||||||||| |
|
|
| T |
44398 |
aattgttatgtgtctaaaaagcaatgacttatcaataatgggccaatgagcccatctgaactaacagacccaactcaatttt |
44317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0446 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0446
Description:
Target: scaffold0446; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 532
Target Start/End: Complemental strand, 7806 - 7762
Alignment:
| Q |
488 |
agtttgaggtgcttgtgagtaattgttgggtgcctaaagagcaat |
532 |
Q |
| |
|
|||||||||||||||||| ||||||| |||| |||||||||||| |
|
|
| T |
7806 |
agtttgaggtgcttgtgaacaattgttaggtgtctaaagagcaat |
7762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 532
Target Start/End: Original strand, 56071565 - 56071609
Alignment:
| Q |
488 |
agtttgaggtgcttgtgagtaattgttgggtgcctaaagagcaat |
532 |
Q |
| |
|
|||||||||||||||||| ||||||| |||| |||||||||||| |
|
|
| T |
56071565 |
agtttgaggtgcttgtgaacaattgttaggtgtctaaagagcaat |
56071609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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