View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4360-Insertion-8 (Length: 550)
Name: NF4360-Insertion-8
Description: NF4360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4360-Insertion-8 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 97 - 404
Target Start/End: Original strand, 32940347 - 32940654
Alignment:
| Q |
97 |
acaagcatggagtttctaattaaactcgtcacatttctagttttcttaatgcctacaatctcttcctcccaatatcttgaaaacaatacactcaccaatc |
196 |
Q |
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| T |
32940347 |
acaagcatggagtttctaattaaactcatcacatttctactcttcttgatgcctacaatctcttcctcccaatatcttggaaacaatatactcaccaatc |
32940446 |
T |
|
| Q |
197 |
gtaagagattcccaaaacaagaaaatctaacctcgtacgctgtcgtctttgatgctggtagcaatggtaccagtgtccatgtttatcattttgatcagaa |
296 |
Q |
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|||| | ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| | |||| ||||| || |||||||||||||| |
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| T |
32940447 |
gtaaaatatttccaaaacaagaaactctaacctcgtacgctgtcgtctttgatgctggtagcaccggtagccgtgttcatgtctaccattttgatcagaa |
32940546 |
T |
|
| Q |
297 |
cttaaatctccttcacattggcaacgatgttgagttctataataaggttattaattaaatattacatcttggctttacaagtttcgtaagaaataaataa |
396 |
Q |
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|||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32940547 |
cttagatcttcttcacattggcaacgatgttgagttttataataaggttattaattaaatattacatcttggctttacaagtttcgtaagaaataaataa |
32940646 |
T |
|
| Q |
397 |
tatttgtt |
404 |
Q |
| |
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||| |||| |
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| T |
32940647 |
tatatgtt |
32940654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 142 - 332
Target Start/End: Original strand, 32932164 - 32932354
Alignment:
| Q |
142 |
ttaatgcctacaatctcttcctcccaatatcttgaaaacaatacactcaccaatcgtaagagattcccaaaacaagaaaatctaacctcgtacgctgtcg |
241 |
Q |
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||||||||| ||||| |||||||||||||| | | |||||| |||||| ||||| |||| |||| ||||||||||| |||| || ||||||||| |
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| T |
32932164 |
ttaatgcctgcaatcacttcctcccaatatttaggaaacaacctactcactaatcgaaagattttccaaaaacaagaaaccttaacatcttacgctgtca |
32932263 |
T |
|
| Q |
242 |
tctttgatgctggtagcaatggtaccagtgtccatgtttatcattttgatcagaacttaaatctccttcacattggcaacgatgttgagtt |
332 |
Q |
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| T |
32932264 |
tatttgatgctggtagcactggtactcgtgtccatgtttaccattttgaccagaacttagatcttcttcacattggcaatgatattgagtt |
32932354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 142 - 344
Target Start/End: Original strand, 32910312 - 32910514
Alignment:
| Q |
142 |
ttaatgcctacaatctcttcctcccaatatcttgaaaacaatacactcaccaatcgtaagagattcccaaaacaagaaaatctaacctcgtacgctgtcg |
241 |
Q |
| |
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||||||||| ||||| ||||||| |||||| | | |||||| |||||| ||||| |||| |||| ||||||||||| | |||| || ||||||| |
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| T |
32910312 |
ttaatgcctgcaatcacttcctcacaatatttaggaaacaacctactcactaatcgaaagattttccaaaaacaagaaacaatttcctcttatgctgtcg |
32910411 |
T |
|
| Q |
242 |
tctttgatgctggtagcaatggtaccagtgtccatgtttatcattttgatcagaacttaaatctccttcacattggcaacgatgttgagttctataataa |
341 |
Q |
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| |||||||||||||||| ||||| | || | |||||||| |||||||||||||||||| |||| ||||| |||||||| ||||||||||| | |||||| |
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| T |
32910412 |
tgtttgatgctggtagcactggtagccgtattcatgtttaccattttgatcagaacttagatcttcttcatattggcaaagatgttgagttttttaataa |
32910511 |
T |
|
| Q |
342 |
ggt |
344 |
Q |
| |
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||| |
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| T |
32910512 |
ggt |
32910514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 120 - 344
Target Start/End: Original strand, 32921676 - 32921903
Alignment:
| Q |
120 |
actcgtcacatttctagttttcttaatgcctacaatctcttcctcccaatatcttgaaaacaataca---ctcaccaatcgtaagagattcccaaaacaa |
216 |
Q |
| |
|
|||| |||||||||| | ||| | |||||| |||| |||| |||||||||||||| |||||| | | ||||| || ||||||| |||||||||||| |
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| T |
32921676 |
actcatcacatttcttctcttcattatgccttcaatttcttactcccaatatcttggaaacaacatattactcactaaccgtaagattttcccaaaacaa |
32921775 |
T |
|
| Q |
217 |
gaaaatctaacctcgtacgctgtcgtctttgatgctggtagcaatggtaccagtgtccatgtttatcattttgatcagaacttaaatctccttcacattg |
316 |
Q |
| |
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||| | |||| || ||||| || |||||||||||||||| ||| | | ||||||||||||| ||||||||||| ||||||||||| ||||| ||| |
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| T |
32921776 |
gaaccaatttcctcttatgctgttgtgtttgatgctggtagcactggaagccgtgtccatgtttaccattttgatcaaaacttaaatcttcttcatgttg |
32921875 |
T |
|
| Q |
317 |
gcaacgatgttgagttctataataaggt |
344 |
Q |
| |
|
| || ||||||||||| ||||||||||| |
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| T |
32921876 |
gtaaagatgttgagttttataataaggt |
32921903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 329
Target Start/End: Original strand, 32897465 - 32897550
Alignment:
| Q |
244 |
tttgatgctggtagcaatggtaccagtgtccatgtttatcattttgatcagaacttaaatctccttcacattggcaacgatgttga |
329 |
Q |
| |
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||||||||||||||| ||||| | |||| ||||||| ||||||||||||||| ||| |||| ||||||||||||| ||| |||| |
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| T |
32897465 |
tttgatgctggtagctctggtagccgtgttcatgtttttcattttgatcagaatttagatcttgttcacattggcaaagatcttga |
32897550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 120 - 344
Target Start/End: Original strand, 11822196 - 11822423
Alignment:
| Q |
120 |
actcgtcacatttctagttttcttaatgcctacaatctcttcctcccaatatcttgaaaacaata---cactcaccaatcgtaagagattcccaaaacaa |
216 |
Q |
| |
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|||| ||||||||||| | ||| |||||||| | || |||| ||||||| |||||| |||||| | |||||| || ||||||| |||||||||||| |
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| T |
11822196 |
actcatcacatttctactcttcataatgccttccatttcttactcccaaaatcttggaaacaacatattactcactaaccgtaagattttcccaaaacaa |
11822295 |
T |
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| Q |
217 |
gaaaatctaacctcgtacgctgtcgtctttgatgctggtagcaatggtaccagtgtccatgtttatcattttgatcagaacttaaatctccttcacattg |
316 |
Q |
| |
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|||| | |||| |||||||| || |||||||||||||||| ||| | | ||||||||||||| ||||||||||| ||||||||||| ||||| ||| |
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| T |
11822296 |
gaaacaatttcctcttacgctgttgtgtttgatgctggtagcactggaagccgtgtccatgtttaccattttgatcaaaacttaaatcttcttcatgttg |
11822395 |
T |
|
| Q |
317 |
gcaacgatgttgagttctataataaggt |
344 |
Q |
| |
|
| || ||||||||||| ||||||||||| |
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|
| T |
11822396 |
gtaaagatgttgagttttataataaggt |
11822423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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