View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4360-Insertion-9 (Length: 485)
Name: NF4360-Insertion-9
Description: NF4360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4360-Insertion-9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 50 - 485
Target Start/End: Complemental strand, 43877711 - 43877289
Alignment:
| Q |
50 |
tactatattgtcttggccacataccaaacaaacacggttaggttggtgcatatatgatcttaattgtcattcatatgtatgtccttagcttaagctagcc |
149 |
Q |
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| T |
43877711 |
tactatattgtcttggccacataccaaataaacacggttaggttggtgcatatatgatcttaattgtcattcatatgtatgtccttagct------agcc |
43877618 |
T |
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| Q |
150 |
ctaggccttaatcgtgatgaaattaatctttctttatttgttgtaataaggaagacatatgcatgcatgggtccccaatctatatagtctggttggcaat |
249 |
Q |
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| T |
43877617 |
ctaggccttaattgtgatgaaattaatctttctttatttgttgtaataaggaagacatatgcatgcatgggtccccaatctatatagtctggttggcaat |
43877518 |
T |
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| Q |
250 |
tgagaaaagagaagtgagaattaattaggaagataatgtagggtgcattccatttccagtaatgttaggtcactatcggacagtaacaagtttttaagtc |
349 |
Q |
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| T |
43877517 |
tgagaaaagagaagtgagaattaattaggaagataatgtagggtgcattccatttccagtaatgttaggtcactatcggacagtaccaagtttttaagtc |
43877418 |
T |
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| Q |
350 |
cttcacccaccactgtccctcccaattataaggctagatatgtgcaagatataagtaattgtttctttctattcaactgtagaaacatgaacaacacggg |
449 |
Q |
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| T |
43877417 |
cttcacccaccactg----tcccaattataaggctagatatgtgcaagatataagtaattgtttctttctattcaactgtagaaacatg---aacacggg |
43877325 |
T |
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| Q |
450 |
ttgtatgtgatcaaattgcttctttccttgctaaca |
485 |
Q |
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| T |
43877324 |
ttgtatgtgatcaaattgcttctttccttgctaaca |
43877289 |
T |
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