View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4361-Insertion-2 (Length: 661)
Name: NF4361-Insertion-2
Description: NF4361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4361-Insertion-2 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 578; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 8 - 661
Target Start/End: Complemental strand, 671056 - 670406
Alignment:
| Q |
8 |
atgatcacaaggatagaaatattgatcccatcaactctctccttttgagtcatggttaaatctcgatcttgtccaaatcgaacatggggg-agactatga |
106 |
Q |
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| T |
671056 |
atgatcacgaggatagaaatattgatcccatcaactctctccttttgagtcatggttaaatctt----ttgtccaaatcgaacatggggggagactatga |
670961 |
T |
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| Q |
107 |
tcgtcatgtttagttgcattaaaatacgaataagctttgcatccacggagtgagtgagtgtgggaaatcgctttgatacaagaaaatttgcacctctgat |
206 |
Q |
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| T |
670960 |
tcatcatgtttagttgcattagaatacgaataagctttgcatccacggagtgagtgagtgtgggaaatcgctttgatgcaagaaaatctgcacctctgat |
670861 |
T |
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| Q |
207 |
tttgtgaagattctagtgtcaagatttttcactattatatttgttaagtggatggacgtgtcattgttggtagttgaacactgagattttctaagacacc |
306 |
Q |
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| T |
670860 |
tttgtgaagattctagtgtcaagatttttcactattatatttgttaagtggatggacgtgtcattgttggtggttgaacactgagattttctaagacacc |
670761 |
T |
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| Q |
307 |
caaattgttctccatcatcaatacccaacctaggactaaatcctggtaaacactgacattgtttccacttatgtctattgcaggtggttaaattacgaca |
406 |
Q |
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| T |
670760 |
caaattgttctccatcatcaatactcaacctaggactaaatcctggtaaacaccgacattgtttccacttatgtctattgcaggtggttaaattacgaca |
670661 |
T |
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| Q |
407 |
ataatcattgaagtcacatacatcataaggtttccaccaaattttaaccctttaaaatgccttgtcccacttaagtagttgaatctctcccgacgagttc |
506 |
Q |
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| T |
670660 |
gtaatcattgaagtcgcatacatcataaggtttccaccaaattttaaccctttaaaatgccttgtcccacttaagtagttgaatctctcccgacgagttc |
670561 |
T |
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| Q |
507 |
atcaacattcttatattcctatgatcatccagagataggtagtatacatatttggcatgtgaagagttttttccattgttcaacaagtaaatcaggggtt |
606 |
Q |
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| T |
670560 |
atcaacattcttatattcctataatcatccagagataggtagtatacatatttcgcatgtgaagagttttttccattgttcaacaagtaaatcaggggtt |
670461 |
T |
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| Q |
607 |
tgggaaggatttcaccagattcccaataaatttcggtgtggttccttattctgta |
661 |
Q |
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| T |
670460 |
tgggaaggatttcaccagattcccaataaatttcggtgtggttccttattctgta |
670406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 672982 - 672895
Alignment:
| Q |
112 |
atgtttagttgcattaaaatacgaataagctttgcatccacggagtgagtgagtgtgggaaatcgctttgatacaagaaaatttgcac |
199 |
Q |
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| T |
672982 |
atgtttagttgaattagaatacgaataagctttgcatccacggagggagtgagtgtgggaactcactttgatgcaagaaaaattgcac |
672895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 673111 - 673029
Alignment:
| Q |
9 |
tgatcacaaggatagaaatattgatcccatcaactctctccttttgagtcatggttaaatctcgatcttgtccaaatcgaacatggg |
95 |
Q |
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| T |
673111 |
tgatcataaagatagatatattgatcccatcaactctctccttgtgaatcatggttaaatc----ccttgtccaaatcgaatatggg |
673029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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