View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4361-Insertion-3 (Length: 609)

Name: NF4361-Insertion-3
Description: NF4361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4361-Insertion-3
NF4361-Insertion-3
[»] chr4 (2 HSPs)
chr4 (7-443)||(21261375-21261808)
chr4 (505-577)||(21261870-21261942)
[»] chr2 (5 HSPs)
chr2 (501-609)||(22018619-22018727)
chr2 (358-439)||(22018475-22018556)
chr2 (86-134)||(28219569-28219617)
chr2 (523-574)||(20714202-20714253)
chr2 (271-335)||(22018331-22018395)
[»] chr3 (4 HSPs)
chr3 (95-158)||(24976328-24976391)
chr3 (86-134)||(42028821-42028869)
chr3 (523-574)||(20986702-20986753)
chr3 (95-129)||(24930486-24930520)
[»] scaffold1789 (1 HSPs)
scaffold1789 (523-574)||(1090-1141)
[»] scaffold0097 (1 HSPs)
scaffold0097 (523-574)||(18041-18092)
[»] chr8 (2 HSPs)
chr8 (523-574)||(22527903-22527954)
chr8 (523-574)||(25990524-25990575)
[»] chr6 (1 HSPs)
chr6 (523-574)||(33094616-33094667)
[»] chr5 (2 HSPs)
chr5 (523-574)||(13173091-13173142)
chr5 (86-134)||(4944315-4944363)
[»] scaffold0777 (1 HSPs)
scaffold0777 (95-129)||(1412-1446)


Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 7 - 443
Target Start/End: Original strand, 21261375 - 21261808
Alignment:
Q  7 atttttatgggtataattcaatatcatgtttttggtatagttcaaaaccatttgcaaatgctgcaggaaaaccaatctgttcaattcttgtgaacacatg 106  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  21261375 atttttataggtataattcaatatcatgtttttgatatagttcaaaaccatttgcaaatgctgcaggaaaaa-aatctgttcaattcttgtgaacacatg 21261473  T
Q  107 aaatgcaggtttattttgtattcaacattctcatagctaatctttattattttcacatataattcattattgcatcatcatatgatnnnnnnnnncaaaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||         |||||    
T  21261474 aaatgcaggtttattttgtattcaacattctcatagctaatctttatcattttcgcatataattcattattgcatcatcatatgat---aaaaaacaaaa 21261570  T
Q  207 cac--tactaccaaaacataagtcaccaaaacattatctttcactttatagcaccagaatgacaataataattaactaccaaaacaattgtcatcaaact 304  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21261571 cactatactaccaaaacataagtcaccaaaacattatctttcactttatagcaccagaatgacaataataattaattaccaaaacaattgtcatcaaact 21261670  T
Q  305 atcaatatgtccataagtcatcaaactgtcacaagcnnnnnnnnnngtcaaatataggtccattgtagttgacaatactattcttcaaggactccacaat 404  Q
    ||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21261671 atcaatatgtccataagtcatcaaactgtcacaagc-aaaaaaaaagtcaaatataggtccattgtagttgacaatactattctttaaggactccacaat 21261769  T
Q  405 acctgcaaattttcatatacagatattcaatttcagttg 443  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  21261770 acctgcaaattttcatatacagatattcaattttagttg 21261808  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 505 - 577
Target Start/End: Original strand, 21261870 - 21261942
Alignment:
Q  505 agtcgtgcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatc 577  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21261870 agtcgggcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatc 21261942  T

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Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 501 - 609
Target Start/End: Original strand, 22018619 - 22018727
Alignment:
Q  501 ggatagtcgtgcacaatgagatgtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgcatcggcattcttcacaaggtacatgt 600  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  22018619 ggatagtcgggcacaatgagatgtaacatttctttgtggttatcaattggaattccattaaaagctttcaatgcatcagcattcttaacaaggtacatgt 22018718  T
Q  601 atactttag 609  Q
    |||||||||    
T  22018719 atactttag 22018727  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 358 - 439
Target Start/End: Original strand, 22018475 - 22018556
Alignment:
Q  358 ataggtccattgtagttgacaatactattcttcaaggactccacaatacctgcaaattttcatatacagatattcaatttca 439  Q
    ||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||    
T  22018475 ataggtccattgtagataacaatactcttcttcaaggactccacaatacctgcaaaatttcatataaagatactcaatttca 22018556  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 28219617 - 28219569
Alignment:
Q  86 ttcaattcttgtgaacacatgaaatgcaggtttattttgtattcaacat 134  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28219617 ttcaattctcgtgaacacatgaaatgcaggtttattttgtattcaacat 28219569  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 523 - 574
Target Start/End: Original strand, 20714202 - 20714253
Alignment:
Q  523 gtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgc 574  Q
    ||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  20714202 gtaacatttccttacgcttatcaactggaattccattaaaagctttcaatgc 20714253  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 22018331 - 22018395
Alignment:
Q  271 aataattaactaccaaaacaattgtcatcaaactatcaatatgtccataagtcatcaaactgtca 335  Q
    |||||| ||||||||| |  | ||||||||||||| ||||||||  | |||||||||||||||||    
T  22018331 aataataaactaccaagatcactgtcatcaaactaccaatatgtgaagaagtcatcaaactgtca 22018395  T

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Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 24976391 - 24976328
Alignment:
Q  95 tgtgaacacatgaaatgcaggtttattttgtattcaacattctcatagctaatctttattattt 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  24976391 tgtgaacacatgaaatgcaggtttattttgtattcaacattctcatagccaatctttatcattt 24976328  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 42028821 - 42028869
Alignment:
Q  86 ttcaattcttgtgaacacatgaaatgcaggtttattttgtattcaacat 134  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42028821 ttcaattctcgtgaacacatgaaatgcaggtttattttgtattcaacat 42028869  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 523 - 574
Target Start/End: Complemental strand, 20986753 - 20986702
Alignment:
Q  523 gtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgc 574  Q
    ||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  20986753 gtaacatttccttacgcttatcaactggaattccattaaaagctttcaatgc 20986702  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 129
Target Start/End: Original strand, 24930486 - 24930520
Alignment:
Q  95 tgtgaacacatgaaatgcaggtttattttgtattc 129  Q
    |||||||||||||||||||||||| ||||||||||    
T  24930486 tgtgaacacatgaaatgcaggtttgttttgtattc 24930520  T

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Target: scaffold1789 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1789
Description:

Target: scaffold1789; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 523 - 574
Target Start/End: Complemental strand, 1141 - 1090
Alignment:
Q  523 gtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgc 574  Q
    ||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  1141 gtaacatttccttacgcttatcaactggaattccattaaaagctttcaatgc 1090  T

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Target: scaffold0097 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 523 - 574
Target Start/End: Original strand, 18041 - 18092
Alignment:
Q  523 gtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgc 574  Q
    ||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  18041 gtaacatttccttacgcttatcaactggaattccattaaaagctttcaatgc 18092  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 523 - 574
Target Start/End: Original strand, 22527903 - 22527954
Alignment:
Q  523 gtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgc 574  Q
    ||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  22527903 gtaacatttccttacgcttatcaactggaattccattaaaagctttcaatgc 22527954  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 523 - 574
Target Start/End: Original strand, 25990524 - 25990575
Alignment:
Q  523 gtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgc 574  Q
    ||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  25990524 gtaacatttccttacgcttatcaactggaattccattaaaagctttcaatgc 25990575  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 523 - 574
Target Start/End: Complemental strand, 33094667 - 33094616
Alignment:
Q  523 gtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgc 574  Q
    ||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  33094667 gtaacatttccttacgcttatcaactggaattccattaaaagctttcaatgc 33094616  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 523 - 574
Target Start/End: Original strand, 13173091 - 13173142
Alignment:
Q  523 gtaacatttccttgcggttatcaattggaattccattaaaagctttcaatgc 574  Q
    ||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  13173091 gtaacatttccttacgcttatcaactggaattccattaaaagctttcaatgc 13173142  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 4944363 - 4944315
Alignment:
Q  86 ttcaattcttgtgaacacatgaaatgcaggtttattttgtattcaacat 134  Q
    ||||||||| ||||||| |||||||||||||||||||||||||| ||||    
T  4944363 ttcaattctcgtgaacaaatgaaatgcaggtttattttgtattccacat 4944315  T

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Target: scaffold0777 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 129
Target Start/End: Complemental strand, 1446 - 1412
Alignment:
Q  95 tgtgaacacatgaaatgcaggtttattttgtattc 129  Q
    |||||||||||||||||||||||| ||||||||||    
T  1446 tgtgaacacatgaaatgcaggtttgttttgtattc 1412  T

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