View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4361-Insertion-4 (Length: 499)

Name: NF4361-Insertion-4
Description: NF4361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4361-Insertion-4
NF4361-Insertion-4
[»] chr2 (10 HSPs)
chr2 (11-255)||(32148203-32148443)
chr2 (364-499)||(32148542-32148680)
chr2 (20-158)||(32127941-32128076)
chr2 (391-499)||(32185384-32185492)
chr2 (105-210)||(32152960-32153065)
chr2 (391-478)||(32177227-32177316)
chr2 (201-255)||(32153130-32153184)
chr2 (391-444)||(32179967-32180020)
chr2 (368-407)||(32161014-32161053)
chr2 (172-245)||(32128075-32128156)
[»] chr4 (1 HSPs)
chr4 (20-252)||(5520517-5520748)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 32148203 - 32148443
Alignment:
Q  11 tcaagtgatgatcattgaggttcttgatggggctataataaccaccaggtattgcttgattcctggcagcagaggccaacaaaacaaggaggaaaatagc 110  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  32148203 tcaagtgatgatcattgaggttcttgatggggctataa---ccaccaggtattgcttgattcctggccgcagaggccaacaaaacaaggaggaaaataac 32148299  T
Q  111 aagatattgaaatctcataatgctagtattgtatcgtatcttttcaaacttcaaagattacaatggtgtgaatttatgttggctgcttggatatatatat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32148300 aagatattgaaatctcataatgctagtattgtatcgtatcttt-caaacttcaaagattacaatggtgtgaatttatgttggctgcttggatatatatat 32148398  T
Q  211 tacataaaagttatgccaaggtggtaatatattattttactagtc 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32148399 tacataaaagttatgccaaggtggtaatatattattttactagtc 32148443  T

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Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 364 - 499
Target Start/End: Original strand, 32148542 - 32148680
Alignment:
Q  364 cctcaaattctgttcatgtgatttgatttctcttttcacaacaagtggcttccttcct---tcttcctctcatcacactaacacattctcagttgtaaaa 460  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||||||||||||||||||||||| ||||||||||    
T  32148542 cctcaaattctgttcatgtgatttgatttctcttttcacaacatgtggcttccttcctaattcttcctctcatcacactaacacattcttagttgtaaaa 32148641  T
Q  461 atagtttaaacaagaaaactcttacccatcctttgttta 499  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32148642 atagtttaaacaagaaaactcttacccatcctttgttta 32148680  T

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Target: chr2; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 32127941 - 32128076
Alignment:
Q  20 gatcattgaggttcttgatggggctataataaccaccaggtattgcttgattcctggcagcagaggccaacaaaacaaggaggaaaatagcaagatattg 119  Q
    |||||||||||||||||||||||||||||   ||||| ||| |||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||    
T  32127941 gatcattgaggttcttgatggggctataa---ccacctggttttgcttgatttctggccgcagaggccaacaaaacaaggaggaaaataacaagatattg 32128037  T
Q  120 aaatctcataatgctagtattgtatcgtatcttttcaaa 158  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32128038 aaatctcataatgctagtattgtatcgtatcttttcaaa 32128076  T

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Target: chr2; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 391 - 499
Target Start/End: Original strand, 32185384 - 32185492
Alignment:
Q  391 ttctcttttcacaacaagtggcttccttccttcttcctctcatcacactaacacattctcagttgtaaaaatagtttaaacaagaaaactcttacccatc 490  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32185384 ttctctcttcacaacaagtggcttcctttcttcttcctctcatcacactaacacattctcagttgtaaaaatagtttaaacaagaaaactcttacccatc 32185483  T
Q  491 ctttgttta 499  Q
    |||||||||    
T  32185484 ctttgttta 32185492  T

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Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 32152960 - 32153065
Alignment:
Q  105 aatagcaagatattgaaatctcataatgctagtattgtatcgtatcttttcaaacttcaaagattacaatggtgtgaatttatgttggctgcttggatat 204  Q
    |||| |||||||||||||||| |||||||| ||||||||||||||||||| || ||||||||  |||||||||||||||||||||||| ||||||| |||    
T  32152960 aataacaagatattgaaatcttataatgcttgtattgtatcgtatcttttgaagcttcaaagggtacaatggtgtgaatttatgttggttgcttggttat 32153059  T
Q  205 atatat 210  Q
    ||||||    
T  32153060 atatat 32153065  T

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Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 391 - 478
Target Start/End: Original strand, 32177227 - 32177316
Alignment:
Q  391 ttctcttttcacaacaagtggcttccttccttcttcctctcatcacactaacac--attctcagttgtaaaaatagtttaaacaagaaaa 478  Q
    |||||| |||||||||||||| |||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  32177227 ttctctcttcacaacaagtgggttcctttcttcttcctctcatcacactaacacaaattctcagttgtaaaaatagtttaaacaagaaaa 32177316  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 32153130 - 32153184
Alignment:
Q  201 atatatatattacataaaagttatgccaaggtggtaatatattattttactagtc 255  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||    
T  32153130 atatatatattacattaaagatatgccaaggtggtaatatattattttgctagtc 32153184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 391 - 444
Target Start/End: Original strand, 32179967 - 32180020
Alignment:
Q  391 ttctcttttcacaacaagtggcttccttccttcttcctctcatcacactaacac 444  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||| ||||||    
T  32179967 ttctctcttcacaacaagtagcttccttccttcttcctctcatcacaataacac 32180020  T

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Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 407
Target Start/End: Original strand, 32161014 - 32161053
Alignment:
Q  368 aaattctgttcatgtgatttgatttctcttttcacaacaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32161014 aaattctgttcatgtgatttgatttctcttttcacaacaa 32161053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 32128075 - 32128156
Alignment:
Q  172 aatggtgtgaatttatgttggctgcttgg--------atatatatattacataaaagttatgccaaggtggtaatatattat 245  Q
    |||||||||||||||||||||||||||||        | ||||||||||||| |||| |||| ||| |||||||||||||||    
T  32128075 aatggtgtgaatttatgttggctgcttggttatacatacatatatattacattaaagatatgtcaatgtggtaatatattat 32128156  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 5520748 - 5520517
Alignment:
Q  20 gatcattgaggttcttgatggggctataataaccaccaggtattgcttgattcctggcagcagaggccaacaaaacaaggaggaaaatagcaagatattg 119  Q
    |||||||||||| ||||||||||||||||   ||||| ||||  ||||||||| |||| ||||||||||||||||||| ||||| || |  |||  ||||    
T  5520748 gatcattgaggtccttgatggggctataa---ccacctggtaaagcttgattcatggccgcagaggccaacaaaacaacgaggataacaataagggattg 5520652  T
Q  120 aaatctcataatgctagtattgtatcgtatcttttcaaacttcaaagattacaatggtgtgaattta--------tgttggctgcttggatatatatatt 211  Q
    |||||||||  || | ||  |||    ||||||||||||||||| | ||  ||||||||||| |||         |||||||||||||| ||||||||||    
T  5520651 aaatctcatgttgtttgt--tgt----tatcttttcaaacttcagaaatcgcaatggtgtgagtttgcgttaatctgttggctgcttggttatatatatt 5520558  T
Q  212 acataaaagttatgccaaggtggtaatatattattttacta 252  Q
    ||||||||||||||| |||| ||||||||||  ||||||||    
T  5520557 acataaaagttatgctaagggggtaatatatctttttacta 5520517  T

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