View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4361-Insertion-5 (Length: 288)
Name: NF4361-Insertion-5
Description: NF4361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4361-Insertion-5 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 288
Target Start/End: Complemental strand, 5383578 - 5383298
Alignment:
| Q |
8 |
aagatatgatatgcagttaaccctttcccactgactcactctgtaagaagtctaacctttttaggtaaagttgaaagaactatgcaattgttaatgcttt |
107 |
Q |
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| T |
5383578 |
aagatatgatatgcagttaaccctttcccactgactcactctgtaagaagtctaacctttttaggtaaagttgaaagaactatgcaattgttaatgcttt |
5383479 |
T |
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| Q |
108 |
aaagaaaacaaagttgccacaccnnnnnnnnnnnntgttgagagctttgtttacctgtgacatccgtggtctagaatgaggatctctccttatgcataat |
207 |
Q |
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| T |
5383478 |
aaagaaaacaaagttgccacaccaaaaaaaaataatgttgagagctttgtttacctgtgacatccgtggtctagaatgaggatctctccttatgcataat |
5383379 |
T |
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| Q |
208 |
gaagcagcatgaagcatgcaatagacctcatgttctaaatagtgacctcccagcctcgggtcaatcagttcgtcaatggca |
288 |
Q |
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| T |
5383378 |
gaagcagcatgaagcatgcaatagacctcatgttctaaatagtgacctcccagcctcgggtcaatcagttcgtcaatggca |
5383298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 158 - 288
Target Start/End: Original strand, 43070907 - 43071037
Alignment:
| Q |
158 |
ttacctgtgacatccgtggtctagaatgaggatctctccttatgcataatgaagcagcatgaagcatgcaatagacctcatgttctaaatagtgacctcc |
257 |
Q |
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||||||||||||| ||||||||||| | |||||||| |||||||||||| || || ||||| | ||||||| |||||||||||||| ||||||||| ||| |
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| T |
43070907 |
ttacctgtgacatgcgtggtctagagtaaggatctcgccttatgcataaggatgccgcatgtatcatgcaagagacctcatgttctgaatagtgacttcc |
43071006 |
T |
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| Q |
258 |
cagcctcgggtcaatcagttcgtcaatggca |
288 |
Q |
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| T |
43071007 |
caacattggatcaatcagctcctcaatggca |
43071037 |
T |
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