View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4361_high_2 (Length: 412)

Name: NF4361_high_2
Description: NF4361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4361_high_2
NF4361_high_2
[»] chr7 (7 HSPs)
chr7 (1-401)||(18805941-18806344)
chr7 (146-401)||(5633637-5633892)
chr7 (184-401)||(11568793-11569010)
chr7 (31-86)||(22334287-22334342)
chr7 (41-85)||(14074355-14074399)
chr7 (41-85)||(14384383-14384427)
chr7 (135-171)||(21503595-21503631)
[»] chr8 (5 HSPs)
chr8 (137-401)||(26382563-26382827)
chr8 (25-83)||(24926781-24926839)
chr8 (32-86)||(8541754-8541808)
chr8 (25-83)||(13581946-13582004)
chr8 (40-79)||(6887186-6887225)
[»] chr2 (3 HSPs)
chr2 (137-401)||(33348555-33348819)
chr2 (135-233)||(31810501-31810599)
chr2 (31-72)||(27917030-27917071)
[»] chr4 (7 HSPs)
chr4 (146-401)||(53709400-53709655)
chr4 (36-81)||(18446470-18446514)
chr4 (12-83)||(34332674-34332745)
chr4 (32-72)||(13066741-13066781)
chr4 (24-81)||(29438507-29438564)
chr4 (25-85)||(23354636-23354696)
chr4 (135-171)||(48212082-48212118)
[»] chr6 (5 HSPs)
chr6 (146-401)||(19111583-19111834)
chr6 (135-287)||(32095715-32095867)
chr6 (135-171)||(24176292-24176328)
chr6 (2-85)||(22557947-22558032)
chr6 (17-74)||(32929244-32929301)
[»] chr1 (3 HSPs)
chr1 (196-401)||(5212103-5212309)
chr1 (38-83)||(15297623-15297667)
chr1 (39-83)||(23506686-23506730)
[»] scaffold0015 (1 HSPs)
scaffold0015 (137-247)||(53497-53607)
[»] scaffold0107 (1 HSPs)
scaffold0107 (32-72)||(32742-32782)
[»] scaffold0006 (1 HSPs)
scaffold0006 (135-171)||(204625-204661)
[»] chr3 (5 HSPs)
chr3 (135-171)||(13501902-13501938)
chr3 (135-246)||(8086430-8086541)
chr3 (24-122)||(8713942-8714040)
chr3 (24-122)||(9065829-9065927)
chr3 (31-59)||(12144733-12144761)
[»] scaffold0068 (1 HSPs)
scaffold0068 (135-171)||(6806-6842)
[»] chr5 (2 HSPs)
chr5 (135-171)||(21707068-21707104)
chr5 (25-85)||(22930990-22931050)


Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 18805941 - 18806344
Alignment:
Q  1 agaagtaaaagaaaataaagagataaagtagttgcagggttttaattgtcctgcccaatacgagattaggttgttgtgattcaaaatgataacaacaata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||    
T  18805941 agaagtaaaagaaaataaagagataaagtagttgcagggtttta-ttgtcctgcctaatgcgagattagattgttgtgattcaaaatgataacaacaata 18806039  T
Q  101 agaaaatccttgaatcccatctcaaaattatacgcttgggataaattatctatgcacaaaaaagatggaggcataggattcaagagtttagggactttta 200  Q
    || ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||    
T  18806040 aggaaatctttgaatctcatctcaaaattatacgcttgggataaattatctatgcacaaaaaaaatggaggcatgggattcaagagcttagggactttta 18806139  T
Q  201 atcttgctatgcttggtaagcaggggtggagaattatgaccaatcctctgacgcttatagctagaatgtacaaagtaagatattttccacatagtaannn 300  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||       
T  18806140 atcttgttatgcttggtaagcaggggtggagaattatgaccaatcctctgacgcttatagctagaatgtacaaagtaagatattttccgcatagtaa-tt 18806238  T
Q  301 nnnnnaatctcccttggggcataagccaagc-----tttgtcaggagaattatttgtaatgccaagttcatccttaaggcgggaagcaagtggatgatag 395  Q
         || |||||||||||||||||||||||     |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  18806239 tttttaagctcccttggggcataagccaagctttaatttgtctggagaattatttgtaatgtcaagttcatccttaaggcgggaagcaagtggaagatag 18806338  T
Q  396 gtgatg 401  Q
    ||||||    
T  18806339 gtgatg 18806344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 146 - 401
Target Start/End: Original strand, 5633637 - 5633892
Alignment:
Q  146 ttatctatgcacaaaaaagatggaggcataggattcaagagtttagggacttttaatcttgctatgcttggtaagcaggggtggagaattatgaccaatc 245  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5633637 ttatctatgcacaaaaaagatggaggcatgggattcaagagtttagggacttttaatcttgctatgcttggtaagcaggggtggagaattatgaccaatc 5633736  T
Q  246 ctctgacgcttatagctagaatgtacaaagtaagatattttccacatagtaannnnnnnnaatctcccttggggcataagccaagctttgtcaggagaat 345  Q
    |||  ||||||||||||||||||||||||| |||||||||||| ||||||||        || || ||||||||||||| ||||| |||||| ||||||     
T  5633737 ctcaaacgcttatagctagaatgtacaaagcaagatattttccgcatagtaatttttttgaagcttccttggggcataaaccaagttttgtctggagaag 5633836  T
Q  346 tatttgtaatgccaagttcatccttaaggcgggaagcaagtggatgataggtgatg 401  Q
    |||||||||||| || || |||||||  ||||||||||  |||| |||||||||||    
T  5633837 tatttgtaatgctaaatttatccttagagcgggaagcagatggaagataggtgatg 5633892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 184 - 401
Target Start/End: Complemental strand, 11569010 - 11568793
Alignment:
Q  184 gagtttagggacttttaatcttgctatgcttggtaagcaggggtggagaattatgaccaatcctctgacgcttatagctagaatgtacaaagtaagatat 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||  ||||||||||||||||||||||||| |||||||    
T  11569010 gagtttagggacttttaatcttgctatgcttggtaagcaggggtggagaattatgatcaaccctcaaacgcttatagctagaatgtacaaagcaagatat 11568911  T
Q  284 tttccacatagtaannnnnnnnaatctcccttggggcataagccaagctttgtcaggagaattatttgtaatgccaagttcatccttaaggcgggaagca 383  Q
    ||||| ||||||||        || || | ||||||||||| ||||| |||||  |||||| |||||||| ||| || || |||||||  ||||||||||    
T  11568910 tttccgcatagtaatttttttgaagcttcattggggcataaaccaagttttgtttggagaagtatttgtattgctaaatttatccttagagcgggaagca 11568811  T
Q  384 agtggatgataggtgatg 401  Q
      |||| |||||||||||    
T  11568810 gatggaagataggtgatg 11568793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 22334287 - 22334342
Alignment:
Q  31 gttgcagggttttaattgtcctgcccaatacgagattaggttgttgtgattcaaaa 86  Q
    ||||||||||||||||||| ||||||||| |||||||||||| |  ||||||||||    
T  22334287 gttgcagggttttaattgttctgcccaatgcgagattaggttttgttgattcaaaa 22334342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 14074399 - 14074355
Alignment:
Q  41 tttaattgtcctgcccaatacgagattaggttgttgtgattcaaa 85  Q
    |||||||| |||||||||| ||||||||||||  |||||||||||    
T  14074399 tttaattgccctgcccaatgcgagattaggtttgtgtgattcaaa 14074355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 14384427 - 14384383
Alignment:
Q  41 tttaattgtcctgcccaatacgagattaggttgttgtgattcaaa 85  Q
    |||||||| |||||||||| ||||||||||||  |||||||||||    
T  14384427 tttaattgccctgcccaatgcgagattaggtttgtgtgattcaaa 14384383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 21503595 - 21503631
Alignment:
Q  135 cttgggataaattatctatgcacaaaaaagatggagg 171  Q
    |||||||||||||||||||||| || |||||||||||    
T  21503595 cttgggataaattatctatgcataagaaagatggagg 21503631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 137 - 401
Target Start/End: Complemental strand, 26382827 - 26382563
Alignment:
Q  137 tgggataaattatctatgcacaaaaaagatggaggcataggattcaagagtttagggacttttaatcttgctatgcttggtaagcaggggtggagaatta 236  Q
    ||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26382827 tgggacaagttatctatgcacaaaaaagatggaggcatgggattcaagagtttagggacttttaatcttgctatgcttggtaagcaggggtggagaatta 26382728  T
Q  237 tgaccaatcctctgacgcttatagctagaatgtacaaagtaagatattttccacatagtaannnnnnnnaatctcccttggggcataagccaagctttgt 336  Q
    ||||||||||||  ||||||||||||||||||||||||| |||||||||||| ||||||||        || || ||||||||||||| ||||| |||||    
T  26382727 tgaccaatcctcaaacgcttatagctagaatgtacaaagcaagatattttccgcatagtaatttttttgaagcttccttggggcataaaccaagttttgt 26382628  T
Q  337 caggagaattatttgtaatgccaagttcatccttaaggcgggaagcaagtggatgataggtgatg 401  Q
    | |||||| |||||||||||| || || |||||||  ||||||||||  |||| |||||||||||    
T  26382627 ctggagaagtatttgtaatgctaaatttatccttagagcgggaagcagatggaagataggtgatg 26382563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 24926781 - 24926839
Alignment:
Q  25 aaagtagttgcagggttttaattgtcctgcccaatacgagattaggttgttgtgattca 83  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  24926781 aaagtggttgcagggttttaattgtcctgcccaatacaagattaggttggtgtgattca 24926839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 8541808 - 8541754
Alignment:
Q  32 ttgcagggttttaattgtcctgcccaatacgagattaggttgttgtgattcaaaa 86  Q
    ||||||| |||||||| | ||||||||| ||||||||||||||||||||| ||||    
T  8541808 ttgcaggattttaattattctgcccaatgcgagattaggttgttgtgattgaaaa 8541754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 13581946 - 13582004
Alignment:
Q  25 aaagtagttgcagggttttaattgtcctgcccaatacgagattaggttgttgtgattca 83  Q
    ||||| |||||| ||||| ||||||||| |||||| |||||||||||| ||||||||||    
T  13581946 aaagtggttgcaaggtttcaattgtcctacccaatgcgagattaggttattgtgattca 13582004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 6887186 - 6887225
Alignment:
Q  40 ttttaattgtcctgcccaatacgagattaggttgttgtga 79  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  6887186 ttttaattgtcctgcccaatgcgagattagattgttgtga 6887225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 137 - 401
Target Start/End: Original strand, 33348555 - 33348819
Alignment:
Q  137 tgggataaattatctatgcacaaaaaagatggaggcataggattcaagagtttagggacttttaatcttgctatgcttggtaagcaggggtggagaatta 236  Q
    ||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33348555 tgggacaagttatctatgcacaaaaaagatggaggcatgggattcaagagtttagggacttttaatcttgctatgcttggtaagcaggggtggagaatta 33348654  T
Q  237 tgaccaatcctctgacgcttatagctagaatgtacaaagtaagatattttccacatagtaannnnnnnnaatctcccttggggcataagccaagctttgt 336  Q
    ||||||| ||||  ||||||||||||||||||||||||| |||||||||||| ||||||||        || || | ||||||||||| ||||| |||||    
T  33348655 tgaccaaccctcaaacgcttatagctagaatgtacaaagcaagatattttccgcatagtaatttttttgaagcttcattggggcataaaccaagttttgt 33348754  T
Q  337 caggagaattatttgtaatgccaagttcatccttaaggcgggaagcaagtggatgataggtgatg 401  Q
      |||||| |||||||||||| || || |||||||  ||||||||||  |||| |||||||||||    
T  33348755 ttggagaagtatttgtaatgctaaatttatccttagagcgggaagcagatggaagataggtgatg 33348819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 31810599 - 31810501
Alignment:
Q  135 cttgggataaattatctatgcacaaaaaagatggaggcataggattcaagagtttagggacttttaatcttgctatgcttggtaagcaggggtggagaa 233  Q
    ||||||||||| | || |||||||| |||| |||||||||| | || || ||| | || || |||||||||||||||||||| || || ||||||||||    
T  31810599 cttgggataaactttcaatgcacaataaagttggaggcataagttttaaaagtctgggaacatttaatcttgctatgcttgggaaacaagggtggagaa 31810501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 27917030 - 27917071
Alignment:
Q  31 gttgcagggttttaattgtcctgcccaatacgagattaggtt 72  Q
    |||||||||||||||||||  |||||||| ||||||||||||    
T  27917030 gttgcagggttttaattgtattgcccaatgcgagattaggtt 27917071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 8e-71; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 146 - 401
Target Start/End: Complemental strand, 53709655 - 53709400
Alignment:
Q  146 ttatctatgcacaaaaaagatggaggcataggattcaagagtttagggacttttaatcttgctatgcttggtaagcaggggtggagaattatgaccaatc 245  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  53709655 ttatctatgcacaaaaaagatggaggcatgggattcaagagtttagggacttttaatcttgctatgcttggtaagtaggggtggagaattatgaccaacc 53709556  T
Q  246 ctctgacgcttatagctagaatgtacaaagtaagatattttccacatagtaannnnnnnnaatctcccttggggcataagccaagctttgtcaggagaat 345  Q
    |||  ||||||||||||| ||||||||||| |||||||||||| ||||||||        || || | ||||||||||| ||||| |||||  ||||||     
T  53709555 ctcaaacgcttatagctaaaatgtacaaagcaagatattttccgcatagtaatttttttgaagcttcattggggcataaaccaagttttgtttggagaag 53709456  T
Q  346 tatttgtaatgccaagttcatccttaaggcgggaagcaagtggatgataggtgatg 401  Q
    |||||||||||| || || |||||||  ||||||||||  |||| |||||||||||    
T  53709455 tatttgtaatgctaaatttatccttagagcgggaagcagatggaagataggtgatg 53709400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 18446514 - 18446470
Alignment:
Q  36 agggttttaattgtcctgcccaatacgagattaggttgttgtgatt 81  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  18446514 agggttttaattgtcctgcccaatacgagattaggtt-ttgtgatt 18446470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 34332674 - 34332745
Alignment:
Q  12 aaaataaagagataaagtagttgcagggttttaattgtcctgcccaatacgagattaggttgttgtgattca 83  Q
    |||||||| ||||||||| |||| || |||||||||||| |||| ||| ||||||||||||| | |||||||    
T  34332674 aaaataaaaagataaagtggttgaagagttttaattgtcttgcctaatgcgagattaggttggtttgattca 34332745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 13066781 - 13066741
Alignment:
Q  32 ttgcagggttttaattgtcctgcccaatacgagattaggtt 72  Q
    |||||||||||||||||||||||||||| ||| ||||||||    
T  13066781 ttgcagggttttaattgtcctgcccaatgcgaaattaggtt 13066741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 29438564 - 29438507
Alignment:
Q  24 taaagtagttgcagggttttaattgtcctgcccaatacgagattaggttgttgtgatt 81  Q
    |||||| || ||||||||||||||||| || | ||| |||||||||||| ||||||||    
T  29438564 taaagtggtagcagggttttaattgtcttgacgaatgcgagattaggtttttgtgatt 29438507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 23354696 - 23354636
Alignment:
Q  25 aaagtagttgcagggttttaattgtcctgcccaatacgagattaggttgttgtgattcaaa 85  Q
    ||||| |||| |||||||||||||||||| |||||||| ||||| ||| |  |||||||||    
T  23354696 aaagtggttgtagggttttaattgtcctgtccaatacgtgattatgttttgttgattcaaa 23354636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 48212082 - 48212118
Alignment:
Q  135 cttgggataaattatctatgcacaaaaaagatggagg 171  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  48212082 cttgggacaaattatctatgcataaaaaagatggagg 48212118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 146 - 401
Target Start/End: Complemental strand, 19111834 - 19111583
Alignment:
Q  146 ttatctatgcacaaaaaagatggaggcataggattcaagagtttagggacttttaatcttgctatgcttggtaagcaggggtggagaattatgaccaatc 245  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19111834 ttatctatgcacaaaaaagatggaggcatgggattcaagagtttagggacttt-aatcttgctatgcttggtaagcaggggtggagaattatgaccaatc 19111736  T
Q  246 ctctgacgcttatagctagaatgtacaaagtaagatattttccacatagtaannnnnnnnaatctcccttggggcataagccaagctttgtcaggagaat 345  Q
    ||   || ||| |||||| ||||||||||| |||||||||||| ||||||||        || |  ||||||||||||| ||||| |||||   | |||     
T  19111735 cttaaactcttttagctataatgtacaaagcaagatattttccgcatagtaatttttttgaagcaaccttggggcataaaccaagttttgt---gtgaag 19111639  T
Q  346 tatttgtaatgccaagttcatccttaaggcgggaagcaagtggatgataggtgatg 401  Q
    |||||||||||| || || |||||||  || |||||||  |||| |||||||||||    
T  19111638 tatttgtaatgctaaatttatccttagagctggaagcagatggaagataggtgatg 19111583  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 287
Target Start/End: Original strand, 32095715 - 32095867
Alignment:
Q  135 cttgggataaattatctatgcacaaaaaagatggaggcataggattcaagagtttagggacttttaatcttgctatgcttggtaagcaggggtggagaat 234  Q
    |||||||||||||||| ||||| ||||| |||||||| ||  | ||||| ||| | || |||||||| || |||||| | || || || |||||||||||    
T  32095715 cttgggataaattatcaatgcataaaaacgatggaggtatgagcttcaaaagtcttggtacttttaacctggctatgttaggcaaacaagggtggagaat 32095814  T
Q  235 tatgaccaatcctctgacgcttatagctagaatgtacaaagtaagatattttc 287  Q
    |||||| |||||    || ||||| |||||||| ||||||| || ||||||||    
T  32095815 tatgacgaatccagacacccttattgctagaatttacaaagcaaaatattttc 32095867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 24176292 - 24176328
Alignment:
Q  135 cttgggataaattatctatgcacaaaaaagatggagg 171  Q
    ||||||||||||||||||||||||| |||||||||||    
T  24176292 cttgggataaattatctatgcacaagaaagatggagg 24176328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 22557947 - 22558032
Alignment:
Q  2 gaagtaaaagaaaataaa-gagataaagtagttgcagggtttt-aattgtcctgcccaatacgagattaggttgttgtgattcaaa 85  Q
    ||||||||| |||||||| |||||||||| |||||| | |||| ||||||| ||| |||| ||||||||| ||| | |||||||||    
T  22557947 gaagtaaaaaaaaataaaagagataaagtggttgcaagttttttaattgtcgtgcacaatgcgagattagattggtctgattcaaa 22558032  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 32929244 - 32929301
Alignment:
Q  17 aaagagataaagtagttgcagggttttaattgtcctgcccaatacgagattaggttgt 74  Q
    ||||||||||||| |||| ||| ||||||||||||| | |||| |||||||| |||||    
T  32929244 aaagagataaagtggttgtaggtttttaattgtcctactcaatgcgagattaagttgt 32929301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 196 - 401
Target Start/End: Complemental strand, 5212309 - 5212103
Alignment:
Q  196 ttttaatcttgctatgcttggtaagcaggggtggagaattatgaccaatcctctgacgcttatagctagaatgtacaaagtaagatattttccacatagt 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||| ||||||    
T  5212309 ttttaatcttgctatgcttggtaagcaggggtggagaattatgaccaatcctcaaacgcttatagctagaatgtacaaagcaagatattttccgcatagt 5212210  T
Q  296 aa-nnnnnnnnaatctcccttggggcataagccaagctttgtcaggagaattatttgtaatgccaagttcatccttaaggcgggaagcaagtggatgata 394  Q
    ||         || || ||||||||||||| ||||| ||||   |||||| |||||||||||| || || |||||||  |||||||||| ||||| ||||    
T  5212209 aattttttttgaagctaccttggggcataaaccaagttttgcttggagaagtatttgtaatgctaaatttatccttagagcgggaagcaggtggaagata 5212110  T
Q  395 ggtgatg 401  Q
    |||||||    
T  5212109 ggtgatg 5212103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 15297623 - 15297667
Alignment:
Q  38 ggttttaattgtcctgcccaatacgagattaggttgttgtgattca 83  Q
    |||||||||||| ||||||||| |||||||||||| ||||||||||    
T  15297623 ggttttaattgtactgcccaatgcgagattaggtt-ttgtgattca 15297667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 23506730 - 23506686
Alignment:
Q  39 gttttaattgtcctgcccaatacgagattaggttgttgtgattca 83  Q
    |||||||||||||| || |||| ||||||||||| ||||||||||    
T  23506730 gttttaattgtcctccctaatatgagattaggtttttgtgattca 23506686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 53607 - 53497
Alignment:
Q  137 tgggataaattatctatgcacaaaaaagatggaggcataggattcaagagtttagggacttttaatcttgctatgcttggtaagcaggggtggagaatta 236  Q
    |||||| |||| |||||||| ||||||||| |||| || || || || | |||||| || || |||||||| ||||| || ||||| || ||||||||||    
T  53607 tgggatgaattgtctatgcataaaaaagattgaggtatgggctttaaaaatttaggaaccttcaatcttgcaatgctcggaaagcaaggttggagaatta 53508  T
Q  237 tgaccaatcct 247  Q
    |||||||||||    
T  53507 tgaccaatcct 53497  T

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Target: scaffold0107 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 32782 - 32742
Alignment:
Q  32 ttgcagggttttaattgtcctgcccaatacgagattaggtt 72  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  32782 ttgcagggttttaattgtcctacccaatgcgagattaggtt 32742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 204661 - 204625
Alignment:
Q  135 cttgggataaattatctatgcacaaaaaagatggagg 171  Q
    ||||||||||||||||||||||||| |||||||||||    
T  204661 cttgggataaattatctatgcacaagaaagatggagg 204625  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 13501902 - 13501938
Alignment:
Q  135 cttgggataaattatctatgcacaaaaaagatggagg 171  Q
    ||||||||||||||||||||||||| |||||||||||    
T  13501902 cttgggataaattatctatgcacaagaaagatggagg 13501938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 246
Target Start/End: Original strand, 8086430 - 8086541
Alignment:
Q  135 cttgggataaattatctatgcacaaaaaagatggaggcataggattcaagagtttagggacttttaatcttgctatgcttggtaagcaggggtggagaat 234  Q
    ||||||||||| | || ||||||||||||||| | || || || || || ||| |||| |||||||||  ||||||| | || ||||| || ||||||||    
T  8086430 cttgggataaactttccatgcacaaaaaagatagcggtatgggttttaaaagtctaggaacttttaatactgctatgttggggaagcaaggctggagaat 8086529  T
Q  235 tatgaccaatcc 246  Q
    |||||| |||||    
T  8086530 tatgactaatcc 8086541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 8713942 - 8714040
Alignment:
Q  24 taaagtagttgcagggttttaattgtcctgcccaatacgagattaggttgttgtgattcaaaatgataacaacaataagaaaatccttgaatcccatct 122  Q
    |||||| | |||||||||| |||||||||||||||| | ||||||||||    ||||||| ||   ||||||| || ||  ||||||||||||||||||    
T  8713942 taaagttgatgcagggtttaaattgtcctgcccaatgcaagattaggtttggttgattcagaagattaacaacgattagggaatccttgaatcccatct 8714040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 9065829 - 9065927
Alignment:
Q  24 taaagtagttgcagggttttaattgtcctgcccaatacgagattaggttgttgtgattcaaaatgataacaacaataagaaaatccttgaatcccatct 122  Q
    |||||| | |||||||||| |||||||||||||||| | ||||||||||    ||||||| ||   ||||||| || ||  ||||||||||||||||||    
T  9065829 taaagttgatgcagggtttaaattgtcctgcccaatgcaagattaggtttggttgattcagaagattaacaacgattagggaatccttgaatcccatct 9065927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 12144733 - 12144761
Alignment:
Q  31 gttgcagggttttaattgtcctgcccaat 59  Q
    |||||||||||||||||||||||||||||    
T  12144733 gttgcagggttttaattgtcctgcccaat 12144761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 6842 - 6806
Alignment:
Q  135 cttgggataaattatctatgcacaaaaaagatggagg 171  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  6842 cttgggacaaattatctatgcataaaaaagatggagg 6806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 21707068 - 21707104
Alignment:
Q  135 cttgggataaattatctatgcacaaaaaagatggagg 171  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  21707068 cttgggacaaattatctatgcataaaaaagatggagg 21707104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 22931050 - 22930990
Alignment:
Q  25 aaagtagttgcagggttttaattgtcctgcccaatacgagattaggttgttgtgattcaaa 85  Q
    ||||||||||||  |||||||||||  |||||||||||||||| || || | |||||||||    
T  22931050 aaagtagttgcattgttttaattgttttgcccaatacgagattcgggtggtttgattcaaa 22930990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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