View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4361_high_6 (Length: 239)
Name: NF4361_high_6
Description: NF4361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4361_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 9 - 231
Target Start/End: Complemental strand, 18475693 - 18475470
Alignment:
| Q |
9 |
acatcatcaaattagatggtcaaaatcatgaattggcaaaaaattt-agaaatgggtatcaaaattgcacaattaaaaatggagggaataaaattgctat |
107 |
Q |
| |
|
||||||||||||| |||||||||||| | ||||||||| ||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18475693 |
acatcatcaaattggatggtcaaaattacaaattggcaattttttttaaaaatgggtatcaaaattgcgcaattaaaaatggagggaataaaattgctat |
18475594 |
T |
|
| Q |
108 |
ttttgtcataataggggatccgaaccacgtttaaacttaaaaatttatacaacattatatattttcctacttaaaatctaactcaactgacaatgacaac |
207 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||| |
|
|
| T |
18475593 |
ttttgtcataataggggatccgaaccgcgtttaaacttaaaaatttatacaacattatatatttttctacgtaagatctaactcaactgacaatgacaat |
18475494 |
T |
|
| Q |
208 |
attattatgctaaacactttcacc |
231 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
18475493 |
attgttatgctaaacactttcacc |
18475470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 18470457 - 18470347
Alignment:
| Q |
9 |
acatcatcaaattagatggtcaaaatcatgaattggcaaaaaatttagaaatgggtatcaaaattgcacaattaaaaatggagggaataaaattgctatt |
108 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||| ||| |||||||||| | ||||||||||| ||||| ||||| |||||| |||||||| ||| |
|
|
| T |
18470457 |
acatcatcaaattagatggtcaaaaccatgatttggtaaatgttttagaaatgagaatcaaaattgcgcaattgaaaatagagggatcaaaattgc-att |
18470359 |
T |
|
| Q |
109 |
tttgtcataata |
120 |
Q |
| |
|
||||||| |||| |
|
|
| T |
18470358 |
tttgtcaaaata |
18470347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 18470277 - 18470227
Alignment:
| Q |
189 |
ctcaactgacaatgacaacattattatgctaaacactttcacccaagtttt |
239 |
Q |
| |
|
||||||| |||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
18470277 |
ctcaactaacaatgacaacattgttatgctggacactttcacccaagtttt |
18470227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 10565648 - 10565682
Alignment:
| Q |
9 |
acatcatcaaattagatggtcaaaatcatgaattg |
43 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10565648 |
acatcatcaaattagatagtcaaaatcatgaattg |
10565682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 37
Target Start/End: Complemental strand, 9460103 - 9460075
Alignment:
| Q |
9 |
acatcatcaaattagatggtcaaaatcat |
37 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
9460103 |
acatcatcaaattagatggtcaaaatcat |
9460075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University