View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4361_low_2 (Length: 419)
Name: NF4361_low_2
Description: NF4361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4361_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Complemental strand, 11826802 - 11826417
Alignment:
| Q |
19 |
ctaactactagttaggtcatagctgaaaaccctcaagatcttaacctatatggaagggcaactaatcatcctttggcaatttatgtatcgcatataaaga |
118 |
Q |
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| T |
11826802 |
ctaactactagttaggtcatagctgaaaaccctcaagatcttaacctatatggaagggcaactaattatcctttggcaatttatgtatcgcatataaaga |
11826703 |
T |
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| Q |
119 |
tctcaaatatatagaatagctactcgtgtgtacgcattaagaaacatgattaattagtgcactttgttattttgctgttatatatatacgtgtcgttgat |
218 |
Q |
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| T |
11826702 |
tctcaaatatatagaatagctactcgtgtgtatgcattaagaaacatgattaattagtgcactttgttattttgctgttatatatatatgtgtcgttgat |
11826603 |
T |
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| Q |
219 |
tactttatatatgttaaaattttcatagctagatcaatgaaatatttctacttccaagatatcttttttgctgttgtacattttggcataaaaaatgtca |
318 |
Q |
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| T |
11826602 |
tgctttatatatgttgaaattttcatagctagatcaatgaaatatttctacttccaagatatcttttttgctgttgtacattttggcataaaaaatgtta |
11826503 |
T |
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| Q |
319 |
gtattgtattgttagtttttatattgagggtggggatcaaactattgatttccttattattcacccttatattccctttttctgtg |
404 |
Q |
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| T |
11826502 |
gtattgtattgttagtttttatattgagggtggggatcaaactattgatttccttattattcacccttatattccctttttctgtg |
11826417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 11840606 - 11840528
Alignment:
| Q |
45 |
aaaccctcaagatcttaacctatatggaagggcaactaatcatcctttggcaatttatgtatcgcatataaagatctca |
123 |
Q |
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| T |
11840606 |
aaaccctcaagatcttaacctataaggaagggcaaccaatgatcctttggcaatttatgtatcctatataaagatctca |
11840528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 11840402 - 11840334
Alignment:
| Q |
200 |
atatatacgtgtcgttgattactttatatatgttaaaattttcatagctagatcaatgaaatatttctacttc |
272 |
Q |
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| T |
11840402 |
atatatatgtgctgttgattgctttatatatgttgaaattttca----tcgatcaatgaaatatttctacttc |
11840334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 35040359 - 35040395
Alignment:
| Q |
324 |
gtattgttagtttttatattgagggtggggatcaaac |
360 |
Q |
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| T |
35040359 |
gtattgttagtttttatgctgagggtggggatcaaac |
35040395 |
T |
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