View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4362-Insertion-12 (Length: 699)
Name: NF4362-Insertion-12
Description: NF4362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4362-Insertion-12 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 8 - 699
Target Start/End: Complemental strand, 39166435 - 39165744
Alignment:
| Q |
8 |
gttgtaatatctcaggtgcctatgttccctgtaatgatttgcaaaattgtaataaccatgttgatcattccaggaatctaagaaaagcagaaatggaaag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39166435 |
gttgtaatatctcaggtgcctatgttccctgtaatgatttgcaaaattgtaataaccatgttgatcattccaggaatctaagaaaagcagaaatggaaag |
39166336 |
T |
|
| Q |
108 |
gctgcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattgctaaaattgacttggttcgtttca |
207 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39166335 |
gcttcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattgctaaaattgacttggttcgtttca |
39166236 |
T |
|
| Q |
208 |
tttcgtcattcattacttgactgttttttgttgttgttgatgttgcaggtcacttgattgcttttctcttggatggcctatgcgtgatgatggtgannnn |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39166235 |
tttcgtcattcattacttgactgttttttgttgttgttgttgttgcaggtcacttgattgcttttctcttggatggcctatgcgtgatgatggtgatttt |
39166136 |
T |
|
| Q |
308 |
nnnaaatccacaagtgatttgacacaggttatattttaagaagttactggattgattttaaaaagctttatttttggcacttatataaattccatatcag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39166135 |
tttaaatccacaagtgatttgacacaggttatattttaagaagttactggattgattttaaaatgctttatttttggcacttatataaattccatatcag |
39166036 |
T |
|
| Q |
408 |
ggaagaaagggtgcatcaagaaaatctgggaaacttggaaaatcaaattttattgaaacacggacattttggcacatcttccgcagttttgatcgtctct |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39166035 |
ggaagaaagggtgcatcaagaaaatctgggaaacttggaaaatcaaattttattgaaacacggacattttggcacatcttccgcagttttgatcgtctct |
39165936 |
T |
|
| Q |
508 |
ggaccnnnnnnnnactgggtttgcaggtatttgtgtnnnnnnnnnnnnngacatgctttaagtcaatattcccccttattgtgtttatgacaagtcttgg |
607 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39165935 |
ggaccttttttttactgggtttgcaggtatttgtgtaaaaaaaaagaaagacatgctttaactcaatattcccccttattgtgtttatgacaagtcttgg |
39165836 |
T |
|
| Q |
608 |
gaattctcattacaggtgatgttcattattgcatgggatggaatttcaattatggatatctttcagaaggatgttttatataaactgtctag |
699 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39165835 |
gaattctcattacaggtgatgttcattattgcatgggatggaatttcaattatggatatctttcagaaggatgttttatataaactgtctag |
39165744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 95 - 430
Target Start/End: Complemental strand, 5539224 - 5538889
Alignment:
| Q |
95 |
cagaaatggaaaggctgcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattgctaaaattgac |
194 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5539224 |
cagaaatggaaaggcttcacactcagcatggtgcaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattactaaaattgac |
5539125 |
T |
|
| Q |
195 |
ttggttcgtttcatttcgtcattcattacttgactgttttttgttgttgttgatgttgcaggtcacttgattgcttttctcttggatggcctatgcgtga |
294 |
Q |
| |
|
|||||| |||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5539124 |
ttggtttgtttcatttcatcatgcattacttgactgttttttgttgttgttgttgttgcaggtcacttgattgcttttctcttggatggcctataggtga |
5539025 |
T |
|
| Q |
295 |
tgatggtgannnnnnnaaatccacaagtgatttgacacaggttatattttaagaagttactggattgattttaaaaagctttatttttggcacttatata |
394 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
5539024 |
tgatggagatttttttaaatccacaagtgatttgacacaggttatattttaagaagttactggattgattttaaaatgctttattttttgcacttatata |
5538925 |
T |
|
| Q |
395 |
aattccatatcagggaagaaagggtgcatcaagaaa |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
5538924 |
aattccatatcagggaagaaagggtgcatcaagaaa |
5538889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 43963686 - 43963631
Alignment:
| Q |
248 |
tgttgcaggtcacttgattgcttttctcttggatggcctatgcgtgatgatggtga |
303 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43963686 |
tgttgcaggacacctgattgcttttctcttggatggcccatgcgtgatgatggtga |
43963631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 165
Target Start/End: Complemental strand, 43963868 - 43963781
Alignment:
| Q |
78 |
caggaatctaagaaaagcagaaatggaaaggctgcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttt |
165 |
Q |
| |
|
|||||| || |||||||||||||||||| |||| | |||||||| |||| ||| || |||||||||||||||||||| ||||| |||| |
|
|
| T |
43963868 |
caggaagctgagaaaagcagaaatggaatggctcctcactcagcctggtgcaattacgatgatctaaatgagtatttctggttagttt |
43963781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University