View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4362-Insertion-13 (Length: 665)
Name: NF4362-Insertion-13
Description: NF4362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4362-Insertion-13 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 565; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 8 - 665
Target Start/End: Complemental strand, 671056 - 670404
Alignment:
| Q |
8 |
atgatcacaaggatagaaatattgatcccaccaactctctccttttgagtcatggttaaatctcgatcttgtccaaatcgaacatggggggagactatga |
107 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
671056 |
atgatcacgaggatagaaatattgatcccatcaactctctccttttgagtcatggttaaatctt----ttgtccaaatcgaacatggggggagactatga |
670961 |
T |
|
| Q |
108 |
tcatcatgtttagttgcattaaaatacgaataagctttgcatccacggagtgagtgagtgtgggaaatcgctttggtacaagaaaatctgcacctctgat |
207 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
670960 |
tcatcatgtttagttgcattagaatacgaataagctttgcatccacggagtgagtgagtgtgggaaatcgctttgatgcaagaaaatctgcacctctgat |
670861 |
T |
|
| Q |
208 |
tttgtgaagattctagtgtcaagatttttcactattatatttgttaagtggatggacgtgtcattgttggtagttgaacactgagattttctaagacacc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
670860 |
tttgtgaagattctagtgtcaagatttttcactattatatttgttaagtggatggacgtgtcattgttggtggttgaacactgagattttctaagacacc |
670761 |
T |
|
| Q |
308 |
caaattgttctccatcatcaatacccaacctaggactaaatcctggtaaacactgacattgtttccacttatgtctattgcaggtggttaaattacgaca |
407 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
670760 |
caaattgttctccatcatcaatactcaacctaggactaaatcctggtaaacaccgacattgtttccacttatgtctattgcaggtggttaaattacgaca |
670661 |
T |
|
| Q |
408 |
ataatcattgaagtcacatacatcataaggtttccaccaaattttaaccctttaaaatgccttgtcccacttaagtagttgaatctctcccgacgagttg |
507 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
670660 |
gtaatcattgaagtcgcatacatcataaggtttccaccaaattttaaccctttaaaatgccttgtcccacttaagtagttgaatctctcccgacgagttc |
670561 |
T |
|
| Q |
508 |
atcatcattcttatattcctatgatcatccagagataggtagtatacatatttggcatgtgaagagttttttccattgttcaacaagtaaatcatgggtt |
607 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
670560 |
atcaacattcttatattcctataatcatccagagataggtagtatacatatttcgcatgtgaagagttttttccattgttcaacaagtaaatcaggggtt |
670461 |
T |
|
| Q |
608 |
tgggaaggacttcaccagattccccaataaatttcggtgtggttccttattctgtata |
665 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
670460 |
tgggaaggatttcaccagatt-cccaataaatttcggtgtggttccttattctgtata |
670404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 672982 - 672902
Alignment:
| Q |
113 |
atgtttagttgcattaaaatacgaataagctttgcatccacggagtgagtgagtgtgggaaatcgctttggtacaagaaaa |
193 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||| || ||||| | |||||||| |
|
|
| T |
672982 |
atgtttagttgaattagaatacgaataagctttgcatccacggagggagtgagtgtgggaactcactttgatgcaagaaaa |
672902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 673111 - 673001
Alignment:
| Q |
9 |
tgatcacaaggatagaaatattgatcccaccaactctctccttttgagtcatggttaaatctcgatcttgtccaaatcgaacatggggggagactatgat |
108 |
Q |
| |
|
|||||| || |||||| |||||||||||| ||||||||||||| ||| ||||||||||||| ||||||||||||||| ||||| ||| ||||| || |
|
|
| T |
673111 |
tgatcataaagatagatatattgatcccatcaactctctccttgtgaatcatggttaaatc----ccttgtccaaatcgaatatgggtggaaactataat |
673016 |
T |
|
| Q |
109 |
catcatgtttagttg |
123 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
673015 |
cactatgtttagttg |
673001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University