View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4362-Insertion-15 (Length: 537)
Name: NF4362-Insertion-15
Description: NF4362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4362-Insertion-15 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 8 - 359
Target Start/End: Original strand, 36523839 - 36524190
Alignment:
| Q |
8 |
atattatgatttcatctatacttatttattttggtcacggttgagaaggatcaagttaaactatgttgaaatgcagaaggttagcaataagccaaaacac |
107 |
Q |
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| T |
36523839 |
atattatgatttcatctatacttatttattttggtcacggttgagaaggatcaagttaaactatgttgaaatgcagaaggttagcaataagccaaaacac |
36523938 |
T |
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| Q |
108 |
aagaagaattgtggtaaatgtaaggttggagtcaagaaccgtcttaaggaagctaaaaacagtatatctacatcgaagaagcttctaaaggtgttaagtc |
207 |
Q |
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| T |
36523939 |
aagaagaattgtggtaaatgtaaggttggagtcaagaaccgtcttaaggaagctaaaagcagtatatctacatcgaagaagcttctaaaggtgttaagtc |
36524038 |
T |
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| Q |
208 |
aaattgttgttgaagagaagcattcgttgagaagcatgcccctcatcttggctatgagtaacgagcttgatcgtgcctgcaaccaaatcggtcaattcat |
307 |
Q |
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| T |
36524039 |
aaattgttgttgaagagaagcattcgttgagaagcatgcccctcatcttggctatgagtaacgagcttgatcgtgcctgcaaccaaatcgatcaattcat |
36524138 |
T |
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| Q |
308 |
tcaagaacaaagctccaaccagaacaatatcgagtatctcatgaagcatttt |
359 |
Q |
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| T |
36524139 |
tcaagaacaaagctccaaccagaacaatatcgagtatctcatgaagcatttt |
36524190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 403 - 537
Target Start/End: Original strand, 36524234 - 36524368
Alignment:
| Q |
403 |
ttcgcgaggtgaaaatgagcatagtgcaagagcttgaatttgagaagaagataaggaggcaaactgagagactgaacatgaagatttccaaagaaatgga |
502 |
Q |
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| T |
36524234 |
ttcgcgaggtgaaaatgagcatagtgcaagagcttgaatttgagaagaagataaggaggcaaactgagagactgaacatgaagatttccaaagaaatgga |
36524333 |
T |
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| Q |
503 |
gaacataaaagattcctattcaaaactctctaagg |
537 |
Q |
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| T |
36524334 |
gaacataaaagattcctattcaaaactctctaagg |
36524368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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