View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4362-Insertion-16 (Length: 509)

Name: NF4362-Insertion-16
Description: NF4362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4362-Insertion-16
NF4362-Insertion-16
[»] chr3 (3 HSPs)
chr3 (86-509)||(30413150-30413573)
chr3 (23-165)||(30412266-30412408)
chr3 (20-134)||(30423417-30423531)


Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 86 - 509
Target Start/End: Original strand, 30413150 - 30413573
Alignment:
Q  86 atagaaaagattgtgagatcattggaaccacttcagaattctaatgacacaattagtggtgtggagagctcttaatctcaacatcaaacaaccatcaaag 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30413150 atagaaaagattgtgagatcattggaaccacttcagaattctaatgacccaattagtggtgtggagagctcttaatctcaacatcaaacaaccatcaaag 30413249  T
Q  186 tataaagggtcatatatcaagcattagtggtttagaacaacattgaaaaagagccaaatgtatctttaagtgaagaaataaatgaaatgtcataatagca 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30413250 tataaagggtcatatatcaagcattagtggtttagaacaacattgaaaaagagccaaatgtatctttaagtgaagaaataaatgaaatgtcataatagca 30413349  T
Q  286 acttcaatggaagtatctaagaaggtttaatgggagaaaggatttgttcgttattttttctactcaaaattggaagaacttgaggtggcaaagtaggttg 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30413350 acttcaatggaagtatctaagaaggtttaatgggagaaaggatttgttcgttattttttctactcaaaattggaagaacttaaggtggcaaagtaggttg 30413449  T
Q  386 catcaannnnnnnnaaagtagctaaattattatttggtagcattgaaataaaagattggttcatataaatatgaaagtgataagtgttgctcttttttga 485  Q
    ||||||        ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30413450 catcaattttttttaaagtagcttaattattatttggtagcattgaaataaaagattggttcatataaatatgaaagtgataagtgttgctcttttttga 30413549  T
Q  486 caaaaagtgtgggttagagttgca 509  Q
    ||||||||||||||||||||||||    
T  30413550 caaaaagtgtgggttagagttgca 30413573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 30412266 - 30412408
Alignment:
Q  23 gcaatgaaagtagctcacattgtgattcaatgtctgtcggaaagaccaaaatatagaccaagcatagaaaagattgtgagatcattggaaccacttcaga 122  Q
    ||||||||| ||||||| ||| | |||||||||||||| |||| |||| ||||||||||||  ||| || |||||||||||||| |||| | |||||||     
T  30412266 gcaatgaaattagctcatattataattcaatgtctgtctgaaaaaccagaatatagaccaaaaatacaagagattgtgagatcactggagcaacttcagc 30412365  T
Q  123 attctaatgacacaattagtggtgtggagagctcttaatctca 165  Q
    ||||  |||||||| |  |||| ||   |||||||||||||||    
T  30412366 attccgatgacacagtaggtggagtacggagctcttaatctca 30412408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 30423417 - 30423531
Alignment:
Q  20 gaagcaatgaaagtagctcacattgtgattcaatgtctgtcggaaagaccaaaatatagaccaagcatagaaaagattgtgagatcattggaaccacttc 119  Q
    |||||||| |||||||||||  |||  |||| ||||||||||| |  || |||||||||||||| ||| ||  || | |||||||| ||||||| |||||    
T  30423417 gaagcaattaaagtagctcatgttgcaattcgatgtctgtcggcagaacaaaaatatagaccaaacattgacgaggtggtgagatcgttggaacaacttc 30423516  T
Q  120 agaattctaatgaca 134  Q
    || |||| |||||||    
T  30423517 aggattccaatgaca 30423531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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