View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4362-Insertion-17 (Length: 442)

Name: NF4362-Insertion-17
Description: NF4362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4362-Insertion-17
NF4362-Insertion-17
[»] chr8 (4 HSPs)
chr8 (8-208)||(11334089-11334289)
chr8 (254-442)||(11333854-11334042)
chr8 (57-95)||(11293768-11293806)
chr8 (60-96)||(39463099-39463135)
[»] chr4 (2 HSPs)
chr4 (57-96)||(48801503-48801542)
chr4 (178-207)||(19597189-19597218)
[»] chr3 (2 HSPs)
chr3 (57-96)||(38341064-38341103)
chr3 (57-96)||(48655124-48655163)
[»] chr2 (2 HSPs)
chr2 (57-96)||(13215703-13215742)
chr2 (57-96)||(43700732-43700771)
[»] scaffold0086 (1 HSPs)
scaffold0086 (59-96)||(33049-33086)
[»] chr1 (2 HSPs)
chr1 (55-96)||(19349321-19349362)
chr1 (60-96)||(13054802-13054838)
[»] chr7 (1 HSPs)
chr7 (60-96)||(32811318-32811354)
[»] chr5 (2 HSPs)
chr5 (60-96)||(21591812-21591848)
chr5 (60-96)||(21595929-21595965)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 3e-92; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 8 - 208
Target Start/End: Complemental strand, 11334289 - 11334089
Alignment:
Q  8 caataaatctaaaaaagagttttttatttataaatgtgatcaaaaggagtaatatttattgttgattgtagaaaaacatgtaaaataaagagaaatgtta 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  11334289 caataaatctaaaaaagagttttttatttataaatgtgatcaaaaggagtaatatttattgttgatcgtagaaaagcatgtaaaataaagagaaatgtta 11334190  T
Q  108 acgactacccttgttgcattctttaagtgtcttaaatgtaacttcttcnnnnnnnatgagaacttgtatgttcaatgcattagaaattgaactatttgac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  11334189 acgactacccttgttgcattctttaagtgtcttaaatgtaacttcttctttttttatgagaacttgtatgttcaatgcattagaaattgaactatttgac 11334090  T
Q  208 c 208  Q
    |    
T  11334089 c 11334089  T

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Target: chr8; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 254 - 442
Target Start/End: Complemental strand, 11334042 - 11333854
Alignment:
Q  254 taggatactcattacgaacgaagatttattttggttatttcacaatattcatgtatgctaatttataacaaggataannnnnnnnagaaactaaattagc 353  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||| |||||||||    
T  11334042 taggatactcattacgagcgaagatttattttggttatttcacaatattcatgtatgctaatttataacaaggataattttttttagaaaataaattagc 11333943  T
Q  354 cttcttcaataatataaattagtcactaacttagtaacatagtgactaatttgtcttcaccatagtatcatgaagtactttaagtttta 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11333942 cttcttcaataatataaattagtcactaacttagtaacatagtgactaatttgtcttcaccatagtatcatgacgtactttaagtttta 11333854  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 11293806 - 11293768
Alignment:
Q  57 taatatttattgttgattgtagaaaaacatgtaaaataa 95  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  11293806 taatatttattgttgattgaagaaaaagatgtaaaataa 11293768  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 39463135 - 39463099
Alignment:
Q  60 tatttattgttgattgtagaaaaacatgtaaaataaa 96  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  39463135 tatttattgttgattgaagaaaaagatgtaaaataaa 39463099  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 48801503 - 48801542
Alignment:
Q  57 taatatttattgttgattgtagaaaaacatgtaaaataaa 96  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  48801503 taatatttattgttgattgaagaaaaagatgtaaaataaa 48801542  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 207
Target Start/End: Original strand, 19597189 - 19597218
Alignment:
Q  178 ttcaatgcattagaaattgaactatttgac 207  Q
    ||||||||||||||||||||||||||||||    
T  19597189 ttcaatgcattagaaattgaactatttgac 19597218  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 38341103 - 38341064
Alignment:
Q  57 taatatttattgttgattgtagaaaaacatgtaaaataaa 96  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  38341103 taatatttattgttgattgaagaaaaagatgtaaaataaa 38341064  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 48655124 - 48655163
Alignment:
Q  57 taatatttattgttgattgtagaaaaacatgtaaaataaa 96  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  48655124 taatatttattgttgattgaagaaaaagatgtaaaataaa 48655163  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 13215703 - 13215742
Alignment:
Q  57 taatatttattgttgattgtagaaaaacatgtaaaataaa 96  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  13215703 taatatttattgttgattgaagaaaaagatgtaaaataaa 13215742  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 43700771 - 43700732
Alignment:
Q  57 taatatttattgttgattgtagaaaaacatgtaaaataaa 96  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  43700771 taatatttattgttgattgaagaaaaagatgtaaaataaa 43700732  T

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Target: scaffold0086 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 33049 - 33086
Alignment:
Q  59 atatttattgttgattgtagaaaaacatgtaaaataaa 96  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  33049 atatttattgttgattgaagaaaaatatgtaaaataaa 33086  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 19349362 - 19349321
Alignment:
Q  55 agtaatatttattgttgattgtagaaaaacatgtaaaataaa 96  Q
    ||||||||||||||||||||| ||||||| ||| ||||||||    
T  19349362 agtaatatttattgttgattgaagaaaaagatgcaaaataaa 19349321  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 13054838 - 13054802
Alignment:
Q  60 tatttattgttgattgtagaaaaacatgtaaaataaa 96  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  13054838 tatttattgttgattgtagaaaaagatgcaaaataaa 13054802  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 32811318 - 32811354
Alignment:
Q  60 tatttattgttgattgtagaaaaacatgtaaaataaa 96  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  32811318 tatttattgttgattgaagaaaaagatgtaaaataaa 32811354  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 21591812 - 21591848
Alignment:
Q  60 tatttattgttgattgtagaaaaacatgtaaaataaa 96  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  21591812 tatttattgttgattgaagaaaaatatgtaaaataaa 21591848  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 21595929 - 21595965
Alignment:
Q  60 tatttattgttgattgtagaaaaacatgtaaaataaa 96  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  21595929 tatttattgttgattgaagaaaaatatgtaaaataaa 21595965  T

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