View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4362-Insertion-18 (Length: 430)
Name: NF4362-Insertion-18
Description: NF4362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4362-Insertion-18 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 8 - 428
Target Start/End: Complemental strand, 8285109 - 8284689
Alignment:
| Q |
8 |
gtgggtcttgctggtacatgtgaatcatattcattgcttcctcttgaatcttctcttgatcatatcggtgattcattgaggcaattccacttttacttcc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8285109 |
gtgggtcttgctggtacatgtgaatcatattcattgcttcctcttgaatcttctcttgatcatatcggtgattcattgaggcaattccacttttacttcc |
8285010 |
T |
|
| Q |
108 |
atagttcatggtgatctcatgattaactagaggtacatcaacattctgttgaggtaagggttgaaccattgaggagtttccattttcacttccatagttc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8285009 |
atagttcatggtgatctcatgattaactagaggtacatcaacattctgttgaggtaagggttgaaccattgaggagtttccattttcacttccatagttc |
8284910 |
T |
|
| Q |
208 |
atgaaaccagataagtgattaaacctatgtggtggtgtcatggcattaggcactacttcattaatatgattctccacagggaaagagaaaaatgggggtg |
307 |
Q |
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| T |
8284909 |
atgaaaccagataagtgattaaacctatgtggtggtgtcatggcattaggcactacttcattaatatgattctgcacagggaaagagaaaaatgggggtg |
8284810 |
T |
|
| Q |
308 |
taggtagttgtaaatcggtttcagtagggatgcgaaaataagcatcaacttggttttggttcacggacaccgcgggtgaattagaaaacaccgccatccc |
407 |
Q |
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| T |
8284809 |
taggtagttgtaaatcggttccagtaggggtttgaaaataagcatcaacttggttttggttcaccgagactgcgggtgaattagaaaacaccaccatccc |
8284710 |
T |
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| Q |
408 |
atcattagcattagagtatcc |
428 |
Q |
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| T |
8284709 |
atcattagcattggagaatcc |
8284689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 211 - 414
Target Start/End: Complemental strand, 34694959 - 34694753
Alignment:
| Q |
211 |
aaaccagataagtgattaaacctatgtggtggtgtcatggcattaggcactac---ttcattaatatgattctccacagggaaagagaaaaatgggggtg |
307 |
Q |
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| T |
34694959 |
aaaccagagaagtaattaaacccctctggcgttatcatgtcattaagcactacccttttattaatatgattctcaaccgggaaagaggaaaatgggggtg |
34694860 |
T |
|
| Q |
308 |
taggtagttgtaaatcggtttcagtagggatgcgaaaataagcatcaacttggttttggttcacggacaccgcgggtgaattagaaaacaccgccatccc |
407 |
Q |
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| T |
34694859 |
taggtagttgtagaccggttccagtgagggtgtgaggataagtatcatcttgattttggttcagagatattgcgggtgaattaggcaccatcaccatccc |
34694760 |
T |
|
| Q |
408 |
atcatta |
414 |
Q |
| |
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||||||| |
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|
| T |
34694759 |
atcatta |
34694753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 243 - 331
Target Start/End: Complemental strand, 34687001 - 34686910
Alignment:
| Q |
243 |
tgtcatggcattaggcactac---ttcattaatatgattctccacagggaaagagaaaaatgggggtgtaggtagttgtaaatcggtttcag |
331 |
Q |
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||||||| ||||| ||||||| |||||||||||||||||| || ||||||||| ||||||||||||||||||||||| | ||||||||| |
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| T |
34687001 |
tgtcatgtcattaagcactaccctttcattaatatgattctcaaccgggaaagagggaaatgggggtgtaggtagttgtagaccggtttcag |
34686910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 34687209 - 34687150
Alignment:
| Q |
8 |
gtgggtcttgctggtacatgtgaatcatattcattgcttcctcttgaatcttctcttgat |
67 |
Q |
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|||||||||| |||| |||||| ||||||||||| |||||||||||||| |||||||||| |
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| T |
34687209 |
gtgggtcttgttggtgcatgtgcatcatattcatcgcttcctcttgaatattctcttgat |
34687150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 164
Target Start/End: Complemental strand, 34695097 - 34694979
Alignment:
| Q |
46 |
tcctcttgaatcttctcttgatcatatcggtgattcattgaggcaattccacttttacttccatagttcatggtgatctcatgattaactagaggtacat |
145 |
Q |
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||||||||||| |||||||||||| | ||| ||| |||||| |||||| |||| |||||||||||||| || | |||| ||||| |||||| | || |
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| T |
34695097 |
tcctcttgaatattctcttgatcaaaaaggtcattgattgagcagattccatttttgtttccatagttcatgatgttatcataattaagtagaggcagat |
34694998 |
T |
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| Q |
146 |
caacattctgttgaggtaa |
164 |
Q |
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||||||| | ||||||||| |
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| T |
34694997 |
caacattttcttgaggtaa |
34694979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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