View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4362-Insertion-26 (Length: 117)
Name: NF4362-Insertion-26
Description: NF4362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4362-Insertion-26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 86; Significance: 1e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-41
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 32526609 - 32526500
Alignment:
| Q |
8 |
ggtttcaccactaatcatgataatcaaaagtgaaggtgaataagtgtggttttatccacaaaaaggaagtaagctt-attctgtcgataataataagagt |
106 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
32526609 |
ggtttcaccaccaatcatgataatcaaaagcgaaggtgaataagtgtggttttatccacaaaaaggaagtaagcttgatcctgtcaataataataagagt |
32526510 |
T |
|
| Q |
107 |
attagccgct |
116 |
Q |
| |
|
|||||||||| |
|
|
| T |
32526509 |
attagccgct |
32526500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 17262801 - 17262740
Alignment:
| Q |
22 |
tcatgataatcaaaagtgaaggtgaataagtgtggttttatccacaaaaaggaagtaagctt |
83 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||| ||| ||| ||||| ||||||||||| |
|
|
| T |
17262801 |
tcatgataatcaaaagcgaaggtgaataaatgtgccattaaccataaaaaagaagtaagctt |
17262740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 26517848 - 26517739
Alignment:
| Q |
8 |
ggtttcaccactaatcatgataatcaaaagtgaaggtgaataagtgtggttttatccacaaaaaggaagtaagctt-attctgtcgataataataagagt |
106 |
Q |
| |
|
|||||| |||| | |||||||||||||||| ||||||| | |||| |||| ||||||||| ||||||||||| | ||||| | ||| |||||||| |
|
|
| T |
26517848 |
ggtttcgccaccagtcatgataatcaaaagcaaaggtgatcatatgtgactttaaccacaaaaaagaagtaagcttgaccctgtcaagaatgataagagt |
26517749 |
T |
|
| Q |
107 |
attagccgct |
116 |
Q |
| |
|
|||||||||| |
|
|
| T |
26517748 |
attagccgct |
26517739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University