View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4362-Insertion-4 (Length: 958)
Name: NF4362-Insertion-4
Description: NF4362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4362-Insertion-4 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 824; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 824; E-Value: 0
Query Start/End: Original strand, 8 - 958
Target Start/End: Original strand, 37733953 - 37734901
Alignment:
| Q |
8 |
gtgacgatgatggtggcaatgatgaggggcacaaaaaccatcatcgcgatcatgggcatggacatgggcacggtcacaaacacggacacaagcatagacg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37733953 |
gtgacgatgatggtggcaatgatgaggggcacaaaaaccaccatcgcgatcatgggcatggacatgggcacggtcacaaacacggacacaagcatagacg |
37734052 |
T |
|
| Q |
108 |
tcaccagaccgctgagcaagaaaattgttgccgatgggctagggaagtggacaaccaatgtgtttgtgaacttcttgttcgtttgccaccattccttgtt |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37734053 |
tcaccagaccgctgagcaagaaaattgttgccgatgggctagggaagtggacaaccaatgtgtttgtgaacttcttgttcgtttgccaccattccttgtt |
37734152 |
T |
|
| Q |
208 |
aggcctttacatctctacacactcaacattggtgaagactgcgagatcacttactcctgtggtggtccaatatgattctcaaacttgcattgattatgat |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37734153 |
aggcctttacatctctacacactcaacattggtgaagactgcgagatcacttactcctgtggtggtccaatatgattctcaaacttgcattgattatgat |
37734252 |
T |
|
| Q |
308 |
gcgggttatacagttattattatcccgtgtttgtttggnnnnnnnnctcttcaaagtttttacatgtcaatgttatgttacagtatgtcgggaaagnnnn |
407 |
Q |
| |
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|| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37734253 |
gcaggttatacagttattattatcctgtgtttgtttggttttttttctcttcaaagtttttacatgtcaatgttatgttacagtatgtcgggaaagaaaa |
37734352 |
T |
|
| Q |
408 |
nnnnngggtttatagttattgtttgtggttcctatagtattgttatttagcttgtgcaactgttaagtcccgtatacactgcgactggtaaaggttgtaa |
507 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37734353 |
aaaa-gggtttatagttattgtttgtggctcctatagtattgttatttagcttgtgctactgttaagtcccgtatacactgcgattggtaaaggttgtaa |
37734451 |
T |
|
| Q |
508 |
gcaatgctagatttatttattcgtgaatttatgtttgatatgaattgaataattatgtaccggtattagctaattgattttaaaataattccatatcttt |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37734452 |
gcaatgctagatttatttattcgtgaatttatgtttgatatgaattgaataattatgtaccggtattagctaattgattttaaaataattccatatcttt |
37734551 |
T |
|
| Q |
608 |
cacgccattgttttcagaagatacctcgtgagttgtaagatcaatttgtgagagtaaattgttcaagcgtgtagat--atattttttcattatgacttag |
705 |
Q |
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||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
37734552 |
cacgccatt---ttcagaagatacctcgtgagttgtaagaccaatttgtgagagtaaattgttcaagcgtgtagatgtatattttttcattatgacatag |
37734648 |
T |
|
| Q |
706 |
gttcctttactcaattgattagccttggctaataatgcttttcatattgtcatgagaattgataaatcaccagtagcaattttgcaccatcagtgtcttg |
805 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37734649 |
gttcctttactcaattgattagccttggctaataatgcttttcatattgtcatgagaattgataaatcaccagtagcaattttgcaccatcagtgtcttg |
37734748 |
T |
|
| Q |
806 |
aatctttctaaacaaaaatctcgttttagtataaatcaaattaattcctaaaattgtgatattaaccatacagtatgtcaaacaaaatatattcatgacc |
905 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37734749 |
aatctttctaaacaaaaatctcgttttagtataaatcaaattaattcctaaaattgtgatattaaccatacagtatgtcaaactcaatatattcatgacc |
37734848 |
T |
|
| Q |
906 |
atataattttactgcatcttttaaactaggtaataaatagtaataattgcaag |
958 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37734849 |
atataattttactgcatcttttaaacatggtaataaatagtaataattgcaag |
37734901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 736 - 958
Target Start/End: Original strand, 37750141 - 37750362
Alignment:
| Q |
736 |
aataatgcttttcatattgtcatgagaattgataaatcaccagtagcaattttgcaccatcagtgtcttgaatctttctaaacaaaaatctcgttttagt |
835 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37750141 |
aataatgcttttcatattgtcatgagaattgataaatcaccagtagcaattttgcaccatcagtgtcttgaatctttttaaacaaaaatctcgttttagt |
37750240 |
T |
|
| Q |
836 |
ataaatcaaattaattcctaaaattgtga-tattaaccatacagtatgtcaaacaaaatatattcatgaccatataattttactgcatcttttaaactag |
934 |
Q |
| |
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| T |
37750241 |
ataaataaaattaattcctaaaactgttatttttaaccatacaggaaggcaaactca--atattcatgaccatataattttactgcatcttttaaacatg |
37750338 |
T |
|
| Q |
935 |
gtaataaatagtaataattgcaag |
958 |
Q |
| |
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| T |
37750339 |
gtaataaatagtaataattacaag |
37750362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 125 - 326
Target Start/End: Original strand, 37749551 - 37749740
Alignment:
| Q |
125 |
aagaaaattgttgccgatgggctagggaagtggacaaccaatgtgtttgtgaacttcttgttcgtttgccaccattccttgttaggcctttacatctcta |
224 |
Q |
| |
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||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37749551 |
aagaaaattgttgtcgataagctaggaaagtggacaaccaatgtgtttgtgaacttcttgttcatttgccaccattccttgttaggcctttacatctcta |
37749650 |
T |
|
| Q |
225 |
cacactcaacattggtgaagactgcgagatcacttactcctgtggtggtccaatatgattctcaaacttgcattgattatgatgcgggttatacagttat |
324 |
Q |
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| T |
37749651 |
cacactcaacattggtgaagactgcgagatcactt------------gtccaatatgattcacaaacttgcatcaattatgatgcaggttatacatttat |
37749738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 413 - 670
Target Start/End: Original strand, 37749829 - 37750090
Alignment:
| Q |
413 |
gggtttatagttattgtttgtggttcctatagtattgttatttagcttgtgcaactgttaagtcccgtatacactgcgactggtaaaggttgtaagcaat |
512 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| ||||||||||||| |||||| |||||| || |||| || | | ||| |||||||| ||||| |
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| T |
37749829 |
gggtttgtagttattgtttgtggttcctatagtat----atttagcttgtgctactgtttagtcccatacacacagccattagtagaggttgtatgcaat |
37749924 |
T |
|
| Q |
513 |
gc-----------tagatttatttattcgtgaatttatgtttgatatgaattgaataattatgtaccggtattagctaattgattttaaaataattccat |
601 |
Q |
| |
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|| || ||||||||||| |||||||||||||||||||| |||||||||||||||| | |||||||||||| |||||||||||||||||| |
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| T |
37749925 |
gcctccatataactaactttatttattcatgaatttatgtttgatatgagttgaataattatgtactgatattagctaatt-attttaaaataattccat |
37750023 |
T |
|
| Q |
602 |
atctttcacgccattgttttcagaaga-tacctcgtgagttgtaagatcaatttgtgagagtaaattgtt |
670 |
Q |
| |
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||||||||||||| ||||||||||| ||||||||||||| | || ||||||||| |||||||||||| |
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| T |
37750024 |
atctttcacgcca---ttttcagaagaggacctcgtgagttggaggaccaatttgtgtgagtaaattgtt |
37750090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 531 - 944
Target Start/End: Complemental strand, 38612568 - 38612159
Alignment:
| Q |
531 |
tgaatttatgtttgatatgaattgaataattatgtaccggtattagctaattgattttaaaataattccatatctttcacgccattgttttcagaagat- |
629 |
Q |
| |
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||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||| | ||||||||| ||||||||||||||||| |
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| T |
38612568 |
tgaatttatgtttgatatgaattgaataattatatattcatattagctaattaattttaaaataattccttgtctttcacgtcattgttttcagaagatc |
38612469 |
T |
|
| Q |
630 |
-acctcgtgagttgtaagatcaatttgtgagagtaaattgttcaagcgtgtagatatattttttcattatgacttaggttcctttactcaattgattagc |
728 |
Q |
| |
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| ||| ||||||| || | ||||||||||||| |||||| || ||| ||||||| |||||||||||| | |||||||||| |||| ||||||||| |
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| T |
38612468 |
gagctcttgagttggaa-accaatttgtgagagagcattgtt--agtgtgaagatata-tttttcattatg-cctaggttccttcactcgattgattagt |
38612374 |
T |
|
| Q |
729 |
ct---------------tggctaataatgcttttcatattgtcatgagaattgataaatcaccagtagcaattttgcaccatcagtgtcttgaatctttc |
813 |
Q |
| |
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|| | |||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| || ||||| |||| |
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| T |
38612373 |
ctttaaagtttcaagggtagctaataatgtttctcatattgttatgagaattgataaatcaccagtagcaattttgcactat-------ttgaaactttt |
38612281 |
T |
|
| Q |
814 |
taaacaaaaatctcgttttagtataaatcaaattaattcctaaaattgtgatattaaccatacagtatgtcaaacaaaatatattcatgaccatataatt |
913 |
Q |
| |
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|||||||||||| ||||| ||||||||||||| |||||| || ||||| |||||| | | ||||| || |||||||||||||| | ||| |
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| T |
38612280 |
taaacaaaaatccaattttaatataaatcaaatt---------aattgtcattttaacaatacagcaaggcaaactcaaaatattcatgaccatttcatt |
38612190 |
T |
|
| Q |
914 |
ttactgcatcttttaaactaggtaataaata |
944 |
Q |
| |
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|| ||||||||||||||| |||||||||| |
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|
| T |
38612189 |
ttgctgcatcttttaaacatagtaataaata |
38612159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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