View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4362-Insertion-6 (Length: 935)
Name: NF4362-Insertion-6
Description: NF4362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4362-Insertion-6 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 832; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 832; E-Value: 0
Query Start/End: Original strand, 7 - 935
Target Start/End: Complemental strand, 25745905 - 25744985
Alignment:
| Q |
7 |
accatgatggtaattagatttagttcttctctttaaatcttttcgatgtattttatgtacgaatacataaagcttttgataaaatgttgtaacttaacgt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25745905 |
accatgatggtaattagatttagttcttctctttaaatcttttcgatgtattttatgtacgaatacataaagcttttgataaaatgctgtaacttaacgt |
25745806 |
T |
|
| Q |
107 |
actgatgtattatgttcttgtgtgcagtaagagcaagaagaaatgaggtttcgaggataaaaacacacagagcagaaatctgcggtttaaaatggtcgaa |
206 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25745805 |
aatgatgtattatgttcttgtgtgcagtaagagcaagaagaaatgaggttttgaggataaaaacacacagagcagaaatctgcggtttaaaatggtcgaa |
25745706 |
T |
|
| Q |
207 |
aaggggcaatttattggctagtggtggcaatgaaaatcatgtttatgtatgggactcgaataaaatgaactcgtcgaatttcttgcattgttttaaagag |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25745705 |
aaggggcaatttattggctagtggtggcaatgaaaatcatgtttatgtatgggactcgaataaaatgaactcgtcaaatttcttgcattgttttaaagag |
25745606 |
T |
|
| Q |
307 |
catactgcggcagtcaaagctcttgattggtgcccttatgattcagatgtgcttgcttctggaggcggaacagatgatagatgtattaagttgtggaatg |
406 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25745605 |
catactgcggcagtcaaagctctcgattggtgcccttatgattcagatgtgcttgcttctggaggcggaacagatgatagatgtattaagttgtggaatg |
25745506 |
T |
|
| Q |
407 |
tacaaagaggaactaacatttgcagcatagataccaaagctcaggtttgtggattacagtggaatagacattacaaagagatattaagtggtcatggttt |
506 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
25745505 |
tacaaagaggaaccaacatttgcagcatagataccaaagctcaggtttgtggattacaatggaatagacattacaaagagatattaagtggtcatggctt |
25745406 |
T |
|
| Q |
507 |
tagtacaagtccagaacacaaccaactgtgtttgtggcaatatccatctatgactaaagttggaggcttggaccctcatacttcgagagtccttcatctt |
606 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
25745405 |
tagtacaagtccagaacacaaccaactgtgtttgtggcaatatccatccatgactaaagttggaggcttggaccctcatacttctagagtcctccatctt |
25745306 |
T |
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| Q |
607 |
tctcaggtatgcttcaagtcattattacttaaaccagtatagtggtaaatcgagagacgattaatcgtccaatgtgaatttttaaagcatgtaataatgt |
706 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
25745305 |
tctcaggtatgcttcaagtcatcattacttaaaccagtatagtggtaaatcgtgagacgattaatcgtccaatgtgaatttttatagcatgtaagaatgc |
25745206 |
T |
|
| Q |
707 |
gagtacagtcattcattatttcattggcaagagcatctaatttagctgcttcagattgttttcatataaacttcaactttgttaaaacatataaacatga |
806 |
Q |
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| T |
25745205 |
gagtacagtcatt--------cattggcaagagcatctaatttagctgcttcagattgttttcatataaacttcaactttgttaaaacatataaacatga |
25745114 |
T |
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| Q |
807 |
atgaaaccacttaaactttatcaaggtgattatttcattcaagttacactaatgctcttatgtcttgcagagtccagatgggttaacagtggtttcagcc |
906 |
Q |
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| T |
25745113 |
atcaaaccacttaaactttatcaaggtgattatttcattcaagttacactaatgctcttatgtcttgcagagtccagatgggttaacagtggtttcagcc |
25745014 |
T |
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| Q |
907 |
ggaggagatgagactcttcgcttttggga |
935 |
Q |
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| T |
25745013 |
ggaggagatgagactcttcgcttttggga |
25744985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 277; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 485 - 935
Target Start/End: Original strand, 4348615 - 4349070
Alignment:
| Q |
485 |
agatattaagtggtcat---ggttttagtacaagtccagaacacaaccaactgtgtttgtggcaatatccatctatgactaaagttggaggcttggaccc |
581 |
Q |
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| T |
4348615 |
agatattaagtggtcatcatggctttagtacaagtccagaacacaaccaactgtgtttgtggcaatatccatctatgactaaagttggtggcttggatcc |
4348714 |
T |
|
| Q |
582 |
tcatacttcgagagtccttcatctttctcaggtatgcttcaagtcattattacttaaaccagtatagtggtaaatcgagagacgattaatcgtccaatgt |
681 |
Q |
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| T |
4348715 |
ccatacttctagagtcctccatctttctcaggtatgcttcaagtcataattacttaaaccagtatagtggtaaatcgagagacgattaatcatccaatgt |
4348814 |
T |
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| Q |
682 |
gaatttttaaagcatgtaataatgtgagtacagtcattcattatttcattggcaagagcatctaatttagctgcttcagattgttttc--------atat |
773 |
Q |
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| T |
4348815 |
gaatttttaaagcatgtaataatgtgagtacaatca--------ttcattggcaagagcatctaatatagttgcttgggattgttttcaacaagtgacat |
4348906 |
T |
|
| Q |
774 |
aaacttcaactttgttaaaacatataaacatgaatgaaaccacttaaactttatcaaggtgattatttcattcaagt--tacactaatgctcttatgtct |
871 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||||||| |
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| T |
4348907 |
caacttcaactatgttaaaacatataaacatgaatgaaaccacttaaactttaacaaggggattatttctttcaagttatacactaatgctcttatgtct |
4349006 |
T |
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| Q |
872 |
tgcagagtccagatgggttaacagtggtttcagccggaggagatgagactcttcgcttttggga |
935 |
Q |
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|||||||| ||||||| ||||| ||||||||| | || ||||||||||| |||||||||||||| |
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| T |
4349007 |
tgcagagttcagatggtttaactgtggtttcatctgggggagatgagacgcttcgcttttggga |
4349070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 3e-32; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 121 - 280
Target Start/End: Complemental strand, 18929212 - 18929053
Alignment:
| Q |
121 |
ttcttgtgtgcagtaagagcaagaagaaatgaggtttcgaggataaaaacacacagagcagaaatctgcggtttaaaatggtcgaaaaggggcaatttat |
220 |
Q |
| |
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||||||| |||||| |||||||||||||||| |||||| || ||||| |||||| |||| || | |||||||| |||||||||||||| ||||||||| |
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| T |
18929212 |
ttcttgtatgcagttagagcaagaagaaatgtggtttctcgggtaaaagcacacaaagcataagtttgcggtttgaaatggtcgaaaagcagcaatttat |
18929113 |
T |
|
| Q |
221 |
tggctagtggtggcaatgaaaatcatgtttatgtatgggactcgaataaaatgaactcgt |
280 |
Q |
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|||| |||||||||||||||||||| | ||||| |||||| | ||||| |||||||||| |
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| T |
18929112 |
tggcaagtggtggcaatgaaaatcacatctatgtgtgggacgcaaataagatgaactcgt |
18929053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 448 - 620
Target Start/End: Complemental strand, 18928709 - 18928523
Alignment:
| Q |
448 |
caggtttgtggattacagtggaatagacattacaaagagatattaagtggtcatggttttagtacaagtccagaacacaaccaactgtgtttgtggcaat |
547 |
Q |
| |
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| T |
18928709 |
caggtttgtggtttacaatggaatagacaccacaaagagatatcaagtggtcatagctttagtacaaatccaaaacataaccaactgtgtttgtggcaat |
18928610 |
T |
|
| Q |
548 |
at-----------ccatctatgactaaagttggaggcttggaccctcatact---tcgagagtccttcatctttctcaggtatgctt |
620 |
Q |
| |
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|| |||||||||| ||| ||||||||||| ||||||||||| || |||||||| |||||||||||||||||||| |
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| T |
18928609 |
atgccaatatccatcatctatgaccaaacttggaggcttgaaccctcatacttcctccagagtcctccatctttctcaggtatgctt |
18928523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 446 - 554
Target Start/End: Complemental strand, 36841081 - 36840973
Alignment:
| Q |
446 |
ctcaggtttgtggattacagtggaatagacattacaaagagatattaagtggtcatggttttagtacaagtccagaacacaaccaactgtgtttgtggca |
545 |
Q |
| |
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||||||||||||| ||||| ||||||||| | |||||||||||||||||||||| |||||||||| |||| |||| ||||||||||||||||||| |
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| T |
36841081 |
ctcaggtttgtggtttacaatggaatagatgccataaagagatattaagtggtcatgactttagtacaaatccaaaacattaccaactgtgtttgtggca |
36840982 |
T |
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| Q |
546 |
atatccatc |
554 |
Q |
| |
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||||||||| |
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| T |
36840981 |
atatccatc |
36840973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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