View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4362-Insertion-8 (Length: 866)
Name: NF4362-Insertion-8
Description: NF4362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4362-Insertion-8 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 732; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 732; E-Value: 0
Query Start/End: Original strand, 8 - 866
Target Start/End: Complemental strand, 13967738 - 13966869
Alignment:
| Q |
8 |
gttttgtttttctcgtccacctgcggttactagacattgttggccttttgctggcactctgcaaattagtttgcaattttggaaaactccgaaggcgtca |
107 |
Q |
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||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
13967738 |
gttttgtttatctcgtccacctgcggttactagacatttttggccttttgctggcactctacaaattagtttgcaattttggaaaactccaaaggcgtcg |
13967639 |
T |
|
| Q |
108 |
ccaaaaacaaagtcgattgtgccagagatggcgcagtcacggtagaattggcgttgggattggacgtagagtgtgtcttggaaaccgtccatttgacagt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13967638 |
ccaaaaacaaagtcgattgtgccagagatggcgcagtcacggtagaattgacgttgggattggacgtagagtgtgtcttggaaaccgtccatttgacagt |
13967539 |
T |
|
| Q |
208 |
tgtggaatattgcttgatctgctgttactcggagggcaactgcttgatgtttattcgttcctgctgtgttctcgaagccaatatcctttgccatgaagtt |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13967538 |
tgtggaatattgcttgatctgctgttactcggagggcaactgcttgatttttatttgttcctgctgtgttctcgaagccaatatcctttgccatgaagtt |
13967439 |
T |
|
| Q |
308 |
tgcaccattaacacctgcgatccacgcatgaacaaattaagtaaataaatgtatagtataagtattgtaattaagatgtgtattaaccgatataatattg |
407 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
13967438 |
tgcaccattaacacctgcgatccatgcatgaacaaattaattaaataaatgtgtagtataagtattgtaattaagatgtgtattagcggatataatattg |
13967339 |
T |
|
| Q |
408 |
acttagtgtttgagatcagaaagttaacgagtgaaaccataatgaggtcgaaggtttgatcatcgctccc-----------aacaataataatattttcc |
496 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
13967338 |
acttagtgattgagatcagaaagttaacgagtgataccataatgaggtcgaaggtgtgatcatcgctcccaacataatactaacaataataatattttcc |
13967239 |
T |
|
| Q |
497 |
gctaaaaaacattttgcgtgaattctttagaacttaccgaaagttgcagtattgtaagtgttgataccatcagcatagttgaggctaccagtgaatttgg |
596 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13967238 |
gctaaaaaacattttgcgtgaattctttagaacttaccgaaagttgcagttttgtaagtgttgataccatcagcatagttgaggctaccagtgaatttgg |
13967139 |
T |
|
| Q |
597 |
tcttggtaggaccatcgccaatgacagtaacataactcatttccttagcaacattaacagtctctttataaacaccagccttaacatggatcacaaaagg |
696 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
13967138 |
tcttggtaggaccatcgccaatgacagtaacataattcatttccttagcaacattaacagtctctttatatacaccagccttaacatagatcacaaaagg |
13967039 |
T |
|
| Q |
697 |
tactgcattttgaggaggaacagtcttaagagcatcagttaatgtcttaaactgtccactcccatcttgagccacaacagcattagctttaacatttcca |
796 |
Q |
| |
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| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13967038 |
tgctgcatttgtaggaggaacagtcttaagagcatcagttaatgtcttaaactgtccactcccatcttgagccacaacagcattagctttaacatttcca |
13966939 |
T |
|
| Q |
797 |
ccagcaagaagatgcctatacccgtcactaacccatgaaggaataccatcatcagataaaagcctcctac |
866 |
Q |
| |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13966938 |
ccagcaagaagatgtctatgcccgtcactaacccatgaaggaataccatcatcagataaaagcctcctac |
13966869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 548 - 866
Target Start/End: Complemental strand, 13977355 - 13977037
Alignment:
| Q |
548 |
ttgtaagtgttgataccatcagcatagttgaggctaccagtgaatttggtcttggtaggaccatcgccaatgacagtaacataactcatttccttagcaa |
647 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13977355 |
ttgtaagtgttgataccatcagcatagttgaggctaccagtgaatttggtcttggtaggaccatcgccaatgacagtaacataattcatttccttagcaa |
13977256 |
T |
|
| Q |
648 |
cattaacagtctctttataaacaccagccttaacatggatcacaaaaggtactgcattttgaggaggaacagtcttaagagcatcagttaatgtcttaaa |
747 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13977255 |
cattaacagtctctttataaacaccagccttaacatggatcacaaaaggtactgcattttgaggaggaacagtcttaagagcatcagttaatgtcttaaa |
13977156 |
T |
|
| Q |
748 |
ctgtccactcccatcttgagccacaacagcattagctttaacatttccaccagcaagaagatgcctatacccgtcactaacccatgaaggaataccatca |
847 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
13977155 |
ctgtccactcccatcttgagccacaacagcatcagctttaacatttccaccagcaagaagatgtctatgcccgtcactaacccatgaaggaataccatca |
13977056 |
T |
|
| Q |
848 |
tcagataaaagcctcctac |
866 |
Q |
| |
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||||||||||||||||||| |
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| T |
13977055 |
tcagataaaagcctcctac |
13977037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 72 - 325
Target Start/End: Complemental strand, 13960510 - 13960257
Alignment:
| Q |
72 |
attagtttgcaattttggaaaactccgaaggcgtcaccaaaaacaaagtcgattgtgccagagatggcgcagtcacggtagaattggcgttgggattgga |
171 |
Q |
| |
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||||||||||| |||||||||||| | ||||||||||| | | | ||||||||||||||||||| |||||||||||||||||| |||||||||| | |
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| T |
13960510 |
attagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgattgtgccagagatgctgcagtcacggtagaattgacgttgggattcgg |
13960411 |
T |
|
| Q |
172 |
cgtagagtgtgtcttggaaaccgtccatttgacagttgtggaatattgcttgatctgctgttactcggagggcaactgcttgatgtttattcgttcctgc |
271 |
Q |
| |
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|| ||||||| ||||| |||| || ||||| ||||||| ||| ||||||| ||||||||||||||||| ||||||||||||||||| | | |||||| |
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| T |
13960410 |
cgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttgtctgctgttactcggagtgcaactgcttgatgtttctctggtcctgc |
13960311 |
T |
|
| Q |
272 |
tgtgttctcgaagccaatatcctttgccatgaagtttgcaccattaacacctgc |
325 |
Q |
| |
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|||||| |||| || ||||||||||||||||||||| |||||||||||||||| |
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| T |
13960310 |
tgtgttttcgatgctgatatcctttgccatgaagttttcaccattaacacctgc |
13960257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 515 - 807
Target Start/End: Complemental strand, 13959649 - 13959357
Alignment:
| Q |
515 |
tgaattctttagaacttaccgaaagttgcagtattgtaagtgttgataccatcagcatagttgaggctaccagtgaatttggtcttggtaggaccatcgc |
614 |
Q |
| |
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|||||||||| |||||||||| |||||||| ||||||| || |||||| ||||| |||||||||||||||||||||||||| | ||||||||| | |
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| T |
13959649 |
tgaattctttgctacttaccgaaggttgcagtgttgtaaggtaggagaccatccgcataattgaggctaccagtgaatttggtctttgcaggaccatcac |
13959550 |
T |
|
| Q |
615 |
caatgacagtaacataactcatttccttagcaacattaacagtctctttataaacaccagccttaacatggatcacaaaaggtactgcattttgaggagg |
714 |
Q |
| |
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| T |
13959549 |
caatgatggtaacaaaagccatatccttaggcacattaacagtctcattataaacaccttccttaacataaatcacaaaattctgtgcattattggcagg |
13959450 |
T |
|
| Q |
715 |
aacagtcttaagagcatcagttaatgtcttaaactgtccactcccatcttgagccacaacagcattagctttaacatttccaccagcaagaag |
807 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| || | |||||||||| |
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|
| T |
13959449 |
aacagtcttaatagcatcagttaatgtcttaaactgtccacttccatcttgagccacaacaacattaggtttaacagttgcttcagcaagaag |
13959357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 562 - 612
Target Start/End: Complemental strand, 13968411 - 13968361
Alignment:
| Q |
562 |
accatcagcatagttgaggctaccagtgaatttggtcttggtaggaccatc |
612 |
Q |
| |
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|||||||||||| | ||||||||| |||||||||||||| | ||||||||| |
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| T |
13968411 |
accatcagcataatggaggctaccggtgaatttggtctttgcaggaccatc |
13968361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 1e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 75 - 256
Target Start/End: Original strand, 49871008 - 49871189
Alignment:
| Q |
75 |
agtttgcaattttggaaaactccgaaggcgtcaccaaaaacaaagtcgattgtgccagagatggcgcagtcacggtagaattggcgttgggattggacgt |
174 |
Q |
| |
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|||||||| |||||||||||||| | || |||||||| |||||||||||||| || | |||| |||||| ||||||||||| | || |||||| || |
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| T |
49871008 |
agtttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattgtcttttggattgtgtgt |
49871107 |
T |
|
| Q |
175 |
agagtgtgtcttggaaaccgtccatttgacagttgtggaatattgcttgatctgctgttactcggagggcaactgcttgatg |
256 |
Q |
| |
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||||||| |||||| |||||| ||||| |||||||| ||| | ||||| ||||||||||| |||||||| ||||||||||| |
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| T |
49871108 |
agagtgtatcttggtaaccgttcatttcacagttgtagaacaatgctttgtctgctgttacacggagggccactgcttgatg |
49871189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 78 - 253
Target Start/End: Original strand, 49865074 - 49865249
Alignment:
| Q |
78 |
ttgcaattttggaaaactccgaaggcgtcaccaaaaacaaagtcgattgtgccagagatggcgcagtcacggtagaattggcgttgggattggacgtaga |
177 |
Q |
| |
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||||| |||||||||||||| | || |||||||| |||||||| ||||| || || | |||||| ||||||||||| | || |||||| ||||| |
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| T |
49865074 |
ttgcagttttggaaaactccaacagcatcaccaaagacaaagtcaattgttccgctaatagtgcagtcgcggtagaattgtcttttggattgtgtgtaga |
49865173 |
T |
|
| Q |
178 |
gtgtgtcttggaaaccgtccatttgacagttgtggaatattgcttgatctgctgttactcggagggcaactgcttg |
253 |
Q |
| |
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|||| |||||| ||||||||||||||||||||| ||| | ||||| ||||||||||| |||||||| |||||||| |
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| T |
49865174 |
gtgtatcttggtaaccgtccatttgacagttgtagaacaatgctttgtctgctgttacacggagggccactgcttg |
49865249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 527 - 629
Target Start/End: Original strand, 49865400 - 49865502
Alignment:
| Q |
527 |
aacttaccgaaagttgcagtattgtaagtgttgataccatcagcatagttgaggctaccagtgaatttggtcttggtaggaccatcgccaatgacagtaa |
626 |
Q |
| |
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||||||||||| ||||| ||||||||||| | | ||||||||||||| | ||| ||||| ||| ||||||| || |||||||||||||| | ||||| |
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| T |
49865400 |
aacttaccgaatgttgcggtattgtaagtctgcacaccatcagcatagcttttgctgccagtaaatatggtctttgtgggaccatcgccaataatagtaa |
49865499 |
T |
|
| Q |
627 |
cat |
629 |
Q |
| |
|
||| |
|
|
| T |
49865500 |
cat |
49865502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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