View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4362-Insertion-9 (Length: 865)

Name: NF4362-Insertion-9
Description: NF4362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4362-Insertion-9
NF4362-Insertion-9
[»] chr1 (10 HSPs)
chr1 (12-469)||(38678640-38679098)
chr1 (485-597)||(49420877-49420989)
chr1 (485-604)||(42645955-42646072)
chr1 (349-458)||(17371644-17371753)
chr1 (313-455)||(5609538-5609680)
chr1 (388-455)||(48949645-48949712)
chr1 (352-455)||(24538686-24538789)
chr1 (352-451)||(51113518-51113617)
chr1 (516-562)||(15374654-15374700)
chr1 (468-542)||(23440614-23440688)
[»] chr3 (8 HSPs)
chr3 (488-865)||(54901069-54901446)
chr3 (489-604)||(33862107-33862221)
chr3 (352-455)||(34497257-34497360)
chr3 (352-455)||(55199710-55199813)
chr3 (309-455)||(647012-647158)
chr3 (516-562)||(42147505-42147551)
chr3 (516-562)||(51491754-51491800)
chr3 (390-455)||(31341648-31341713)
[»] chr4 (15 HSPs)
chr4 (485-865)||(33463691-33464071)
chr4 (485-604)||(51412608-51412729)
chr4 (489-586)||(48569424-48569521)
chr4 (305-458)||(53661213-53661369)
chr4 (313-455)||(51734818-51734960)
chr4 (396-455)||(23095413-23095472)
chr4 (702-757)||(48569592-48569647)
chr4 (313-458)||(21321726-21321871)
chr4 (388-455)||(32576969-32577036)
chr4 (388-455)||(37245773-37245840)
chr4 (352-455)||(44935967-44936070)
chr4 (635-674)||(48569574-48569613)
chr4 (388-455)||(49951512-49951579)
chr4 (388-455)||(51259450-51259517)
chr4 (470-523)||(47376851-47376904)
[»] chr5 (9 HSPs)
chr5 (485-865)||(6007289-6007688)
chr5 (352-455)||(22767158-22767261)
chr5 (352-455)||(4268298-4268401)
chr5 (352-454)||(23075032-23075134)
chr5 (308-368)||(12779019-12779079)
chr5 (352-455)||(27292633-27292735)
chr5 (372-455)||(27532811-27532894)
chr5 (475-586)||(33001936-33002047)
chr5 (388-455)||(41940658-41940725)
[»] chr2 (15 HSPs)
chr2 (471-586)||(30544727-30544842)
chr2 (471-586)||(44154915-44155030)
chr2 (485-586)||(8145558-8145659)
chr2 (471-541)||(30545413-30545483)
chr2 (389-458)||(10244492-10244561)
chr2 (471-512)||(44154276-44154317)
chr2 (352-455)||(9710154-9710257)
chr2 (702-757)||(44154789-44154844)
chr2 (635-674)||(8145712-8145751)
chr2 (702-757)||(30544913-30544968)
chr2 (388-455)||(34695825-34695892)
chr2 (388-455)||(34718237-34718304)
chr2 (635-674)||(44154823-44154862)
chr2 (352-458)||(88755-88861)
chr2 (702-756)||(8145730-8145784)
[»] chr6 (3 HSPs)
chr6 (485-604)||(1770699-1770818)
chr6 (468-520)||(33077569-33077621)
chr6 (352-455)||(34104350-34104453)
[»] chr8 (8 HSPs)
chr8 (485-604)||(35839736-35839854)
chr8 (485-604)||(33688237-33688353)
chr8 (309-455)||(11870463-11870609)
chr8 (313-455)||(40588576-40588718)
chr8 (313-455)||(477902-478044)
chr8 (469-543)||(43924994-43925068)
chr8 (313-469)||(13415208-13415364)
chr8 (469-507)||(43924488-43924526)
[»] chr7 (14 HSPs)
chr7 (485-604)||(9009-9129)
chr7 (485-597)||(47800101-47800213)
chr7 (313-455)||(9328448-9328590)
chr7 (313-455)||(16732132-16732274)
chr7 (313-455)||(17710266-17710408)
chr7 (313-455)||(24251638-24251777)
chr7 (388-455)||(29200876-29200943)
chr7 (352-455)||(44481286-44481389)
chr7 (515-562)||(46251434-46251481)
chr7 (469-519)||(41195366-41195416)
chr7 (418-452)||(43782988-43783022)
chr7 (308-369)||(6216578-6216639)
chr7 (469-542)||(7677415-7677488)
chr7 (473-586)||(7677742-7677855)
[»] scaffold0041 (1 HSPs)
scaffold0041 (468-586)||(27218-27336)
[»] scaffold0181 (1 HSPs)
scaffold0181 (517-568)||(15124-15175)
[»] scaffold0016 (1 HSPs)
scaffold0016 (516-562)||(67292-67338)
[»] scaffold0922 (1 HSPs)
scaffold0922 (352-453)||(149-250)


Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 12 - 469
Target Start/End: Original strand, 38678640 - 38679098
Alignment:
Q  12 caacttaagagggaaagaacgcccctacaa--------caaacaccaagaacccaacacaaaaggacagtgaatgaagaaatttaacac-attgtatttt 102  Q
    ||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  38678640 caacttaagagggaaagaacgcccctacaaggctacaacaaacaccaagaacccaacacaaaaggacaatgaatgaagaaatttaacactattgtatttt 38678739  T
Q  103 cagagctgaatttaactcatgacctctagttaggttggaagagatcttttactatgtcatccaaatgtttttggaagaagacaaacattaaaattgtatt 202  Q
    |||||||||||||||||||||||||||||||| ||||||||    |||||||||| |||||||||| |||||||||||||| ||||||||| |||||||     
T  38678740 cagagctgaatttaactcatgacctctagttaagttggaag----cttttactatctcatccaaatatttttggaagaagataaacattaagattgtat- 38678834  T
Q  203 gatgatattgtaaaacgacctataaaatacaacaannnnnnngttaaaatgtcatatggtgtgggatagatggagtaattactattggcttgataaactt 302  Q
       ||||||||||||||||||||||||||||||||       |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38678835 ---gatattgtaaaacgacctataaaatacaacaatttgtttgttaaaatgtcatatggtctgggatagatggagtaattactattggcttgataaactt 38678931  T
Q  303 tcctgatattattaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagt 402  Q
    | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  38678932 tactgatattattaatcaacaaatgttcaatacaaatcggagaaatctaaaaaatatggtgactagcataagaatatgtcgtcttagctaaggtatgagt 38679031  T
Q  403 aatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaagctactttataaata 469  Q
    |||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||    
T  38679032 aatcatattcatttttcgcctaataaacttcaccttgaagttggaatgtaaagctaccttataaata 38679098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 485 - 597
Target Start/End: Complemental strand, 49420989 - 49420877
Alignment:
Q  485 tgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattatt 584  Q
    |||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| |||||| || ||||||||||||| | |||||||||| ||    
T  49420989 tgggaaagggaagttgtttcccatgatggaaaagttgattttagccatttgattaaataaggagcaccctcttatcatgttctctccacactgaattttt 49420890  T
Q  585 ttcacattatctt 597  Q
    |||||| ||||||    
T  49420889 ttcacactatctt 49420877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 485 - 604
Target Start/End: Complemental strand, 42646072 - 42645955
Alignment:
Q  485 tgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattatt 584  Q
    |||||||||||| | |||| |||| |||  ||||||||| || ||||||||||||||||||||| ||||| ||||||||||||| |||||||||||  ||    
T  42646072 tgggaaagggaagtagttttccataatgggaaagttgatcttagccatttgattaaataaagagtacactcttatcatgttctctcaacactgaat--tt 42645975  T
Q  585 ttcacattatctttcccaac 604  Q
    |||||| |||||| ||||||    
T  42645974 ttcacactatcttccccaac 42645955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 349 - 458
Target Start/End: Complemental strand, 17371753 - 17371644
Alignment:
Q  349 ctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaa 448  Q
    |||||||||| ||||||||||  ||||||||| || |  ||||||||||||||  | ||| |||  || || |||||||||||| |||| ||||||||||    
T  17371753 ctcaaaaatacggtgactagctcaagaacatgccgccctagctaaggtatgagcgaccatattcgcttgtctcctaataaacttcaccttgaagttggaa 17371654  T
Q  449 tgtaaagcta 458  Q
    ||||||||||    
T  17371653 tgtaaagcta 17371644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 455
Target Start/End: Complemental strand, 5609680 - 5609538
Alignment:
Q  313 attaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttc 412  Q
    |||||||||| ||||||||||||||   ||| ||   | |||||||  |||||||||  ||||||||| || |  |||||| ||||||| || |||||||    
T  5609680 attaatcaaccaatgttcaatacaagaaggataagaataaaaaatacagtgactagcccaagaacatgccgccctagctaatgtatgagcaaccatgttc 5609581  T
Q  413 atttttcgcctaataaactttacctcgaagttggaatgtaaag 455  Q
      || || ||||| |||||| ||||||||||||||||||||||    
T  5609580 gcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 5609538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 48949645 - 48949712
Alignment:
Q  388 agctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 455  Q
    ||||||| ||||||||| |||||||  || || ||||| |||||| ||||||||||||||||||||||    
T  48949645 agctaagctatgagtaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 48949712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 352 - 455
Target Start/End: Complemental strand, 24538789 - 24538686
Alignment:
Q  352 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 451  Q
    ||||||||||||||||||  |||||||||| |||  ||| || ||||||| ||||||||||  || |  |||||  ||||| ||||| ||||| ||||||    
T  24538789 aaaaatatggtgactagccgaagaacatgttgtcctagcaaaagtatgagcaatcatgttcgcttgtttcctaacgaacttcacctcaaagttagaatgt 24538690  T
Q  452 aaag 455  Q
    ||||    
T  24538689 aaag 24538686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 352 - 451
Target Start/End: Complemental strand, 51113617 - 51113518
Alignment:
Q  352 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 451  Q
    ||||||| |||||||| |  ||||||| |||| |  ||||||| |||||| || |||||||  || || ||||| |||||| ||||||||||||||||||    
T  51113617 aaaaatacggtgactaacccaagaacaggtcgccctagctaagctatgagcaaccatgttcgcttctctcctaacaaacttcacctcgaagttggaatgt 51113518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 516 - 562
Target Start/End: Complemental strand, 15374700 - 15374654
Alignment:
Q  516 aagttgattttggccatttgattaaataaagagcacactattatcat 562  Q
    ||||||||||| |||||| ||||||||||||| |||||| |||||||    
T  15374700 aagttgattttagccattggattaaataaagaacacacttttatcat 15374654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 468 - 542
Target Start/End: Original strand, 23440614 - 23440688
Alignment:
Q  468 tacggtgccatttaatttgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaat 542  Q
    ||||||||||||||||||||||||||  | || ||||| |  ||| ||||||||||| || ||||| ||||||||    
T  23440614 tacggtgccatttaatttgggaaaggagagttctttccaactatggaaaagttgattatgtccattagattaaat 23440688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 488 - 865
Target Start/End: Complemental strand, 54901446 - 54901069
Alignment:
Q  488 gaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattattttc 587  Q
    ||||||||| |||||| ||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54901446 gaaagggaatttgttttccatgatgggaaacttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattattttc 54901347  T
Q  588 acattatctttcccaaccannnnnnnnnnnnnnnnnnnnnnnnaccaaccacaaccagcaacttcacaattgattcatcttccatttgaacgaaaataaa 687  Q
    ||| ||||||||| ||| |                        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54901346 acactatctttccaaacaattctctctcttccatctttctctcaccaaccacaaccagcaacttcacaattgattcatcttccatttgaacgaaaataaa 54901247  T
Q  688 acaattgcaccattacaatctattcatctttaatttccagatcttggtctttgtttaaatttaacctctatttaaatttcaattcgatcctctcttgaat 787  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  54901246 acaattgcaccatcacaatctattcatctttaattttcagatcttggtctttgtttaaatttaacctctatttaaatttcaatttgatcctctcttgaat 54901147  T
Q  788 aagaagaaattcatgctaaaagccatcaagaatttaataatttaagaatttgttcaacatgaatgcagtagttttaga 865  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  54901146 aagaagaaattcatgctaaaagccatcaagaatttaataatttaagaatttgttcaacattaatgcagtagttttaga 54901069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 489 - 604
Target Start/End: Complemental strand, 33862221 - 33862107
Alignment:
Q  489 aaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattattttca 588  Q
    |||||||| | |||||| |||||| |||||||||| || ||| |||||||||||||||| |||||| ||||||||||||| | ||||| |||| |||| |    
T  33862221 aaagggaagtagtttcctatgatggaaaagttgatcttagccctttgattaaataaagaacacactcttatcatgttctctctacacttaatt-ttttaa 33862123  T
Q  589 cattatctttcccaac 604  Q
    ||||||||| ||||||    
T  33862122 cattatcttccccaac 33862107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 352 - 455
Target Start/End: Original strand, 34497257 - 34497360
Alignment:
Q  352 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 451  Q
    ||||||| ||||||||||  ||||||| | || |  ||||||| |||||| || |||||||  || || ||||| |||||| ||||||||||||||||||    
T  34497257 aaaaatacggtgactagcccaagaacaggccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgt 34497356  T
Q  452 aaag 455  Q
    ||||    
T  34497357 aaag 34497360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 352 - 455
Target Start/End: Complemental strand, 55199813 - 55199710
Alignment:
Q  352 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 451  Q
    ||||||||||| ||||||  ||||||| | || |  ||||||| |||||| || |||||||  || || ||||| |||||| ||||||||||||||||||    
T  55199813 aaaaatatggtcactagcgcaagaacaggccgccgtagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgt 55199714  T
Q  452 aaag 455  Q
    ||||    
T  55199713 aaag 55199710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 309 - 455
Target Start/End: Original strand, 647012 - 647158
Alignment:
Q  309 tattattaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcat 408  Q
    |||||||||||||| ||||||||||||||    || |||  ||||||||| ||||| |||   ||||||| | || |  | |||| ||||||| || |||    
T  647012 tattattaatcaaccaatgttcaatacaagaaagataaaattcaaaaatacggtgattagtccaagaacaggccgccctaactaaagtatgagcaaccat 647111  T
Q  409 gttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 455  Q
    |||| ||| || ||||| ||| || ||||||||||||||||||||||    
T  647112 gttcgtttgtctcctaacaaatttcacctcgaagttggaatgtaaag 647158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 516 - 562
Target Start/End: Complemental strand, 42147551 - 42147505
Alignment:
Q  516 aagttgattttggccatttgattaaataaagagcacactattatcat 562  Q
    ||||||||||| |||||| ||||||||||||| |||||| |||||||    
T  42147551 aagttgattttagccattggattaaataaagaacacacttttatcat 42147505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 516 - 562
Target Start/End: Original strand, 51491754 - 51491800
Alignment:
Q  516 aagttgattttggccatttgattaaataaagagcacactattatcat 562  Q
    ||||||||||| |||||| ||||||||||||| |||||| |||||||    
T  51491754 aagttgattttagccattggattaaataaagaacacacttttatcat 51491800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 455
Target Start/End: Original strand, 31341648 - 31341713
Alignment:
Q  390 ctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 455  Q
    |||||||||||| || |||||   ||| || |||||||||||| |||| |||||||||||||||||    
T  31341648 ctaaggtatgagcaaccatgtcagtttgtctcctaataaacttcaccttgaagttggaatgtaaag 31341713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 485 - 865
Target Start/End: Original strand, 33463691 - 33464071
Alignment:
Q  485 tgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattatt 584  Q
    |||||||||||| |||||| ||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33463691 tgggaaagggaatttgttttccatgatgggaaaattgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattatt 33463790  T
Q  585 ttcacattatctttcccaaccannnnnnnnnnnnnnnnnnnnnnnnaccaaccacaaccagcaacttcacaattgattcatcttccatttgaacgaaaat 684  Q
    |||||| ||||||||| ||| |                        |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33463791 ttcacactatctttccaaacaattctctctcttgcatctctctctcaccaacaacaaccagcaacttcacaattgattcatcttccatttgaacgaaaat 33463890  T
Q  685 aaaacaattgcaccattacaatctattcatctttaatttccagatcttggtctttgtttaaatttaacctctatttaaatttcaattcgatcctctcttg 784  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33463891 aaaacaattgcaccatcacaatctattcatctttaattttcagatcttggtctttgtttaaatttaacctctatttaaatttcaattcgatcctctcttg 33463990  T
Q  785 aataagaagaaattcatgctaaaagccatcaagaatttaataatttaagaatttgttcaacatgaatgcagtagttttaga 865  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  33463991 aataagaagaaaatcatgctaaaagccatcaaaaatttaataatttaagaatttgttcaacattaatgcagtagttttaga 33464071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 485 - 604
Target Start/End: Original strand, 51412608 - 51412729
Alignment:
Q  485 tgggaaagggaacttgtttcccatgatgaa--aaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaatta 582  Q
    |||||||||||| |||||| |||||| |    |||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||     
T  51412608 tgggaaagggaagttgttttccatgaggggggaaagttgattttagccatttgattaaataaggagcacactcttatcatgttctctcaacactgaattt 51412707  T
Q  583 ttttcacattatctttcccaac 604  Q
    |||||||| |||||| ||||||    
T  51412708 ttttcacactatcttccccaac 51412729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 489 - 586
Target Start/End: Original strand, 48569424 - 48569521
Alignment:
Q  489 aaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattatttt 586  Q
    |||||||| |||||||||||||||  ||||||||||||  || ||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||    
T  48569424 aaagggaagttgtttcccatgatgggaaagttgattttaaccgtttgattaaataaagagtacactgttatcatgttctcacaacactaaattatttt 48569521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 305 - 458
Target Start/End: Complemental strand, 53661369 - 53661213
Alignment:
Q  305 ctgatattattaatcaacaaatgttcaatacaaatcggagaaatctcaaaaa----tatggtgactagcataagaacatgtcgtctgagctaaggtatga 400  Q
    ||||||| |||||| ||||||| |||||||||| | ||  |||||| |||||    ||||||||||| |  ||||||||| || | | || ||| |||||    
T  53661369 ctgatatcattaataaacaaatattcaatacaagtaggctaaatctaaaaaaaaaatatggtgactaacccaagaacatgccgcccgtgcaaag-tatga 53661271  T
Q  401 gtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaagcta 458  Q
    ||| |||||||| ||| ||| |||||||  ||||||||||||||| ||||||||||||    
T  53661270 gtagtcatgttcgtttatcgtctaataatttttacctcgaagttgaaatgtaaagcta 53661213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 455
Target Start/End: Original strand, 51734818 - 51734960
Alignment:
Q  313 attaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttc 412  Q
    |||||||||| |||||||||||||||  ||| ||   ||||| ||| ||| | ||||  ||||||| | || |  |||||| ||||||| || |||||||    
T  51734818 attaatcaaccaatgttcaatacaaaaaggataagaatcaaagatacggtaattagcccaagaacaggccgccctagctaaagtatgagcaaccatgttc 51734917  T
Q  413 atttttcgcctaataaactttacctcgaagttggaatgtaaag 455  Q
    | || || ||||| |||||| ||||||||||||||||||||||    
T  51734918 acttgtcacctaacaaacttcacctcgaagttggaatgtaaag 51734960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 396 - 455
Target Start/End: Complemental strand, 23095472 - 23095413
Alignment:
Q  396 tatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 455  Q
    |||||||||||||||||  || || ||||| |||||| ||||||||||||||||||||||    
T  23095472 tatgagtaatcatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 23095413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 702 - 757
Target Start/End: Original strand, 48569592 - 48569647
Alignment:
Q  702 acaatctattcatctttaatttccagatcttggtctttgtttaaatttaacctcta 757  Q
    ||||| ||||||||||  |||||||||||||||||| ||||||| |||||||||||    
T  48569592 acaatgtattcatcttccatttccagatcttggtctctgtttaattttaacctcta 48569647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 313 - 458
Target Start/End: Complemental strand, 21321871 - 21321726
Alignment:
Q  313 attaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttc 412  Q
    |||||||||| ||||||||||||||   ||| ||   | ||||||| ||||||||||  ||||||| | || |  |||||| ||||||| || |||| ||    
T  21321871 attaatcaaccaatgttcaatacaagaaggataagaataaaaaatacggtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgatc 21321772  T
Q  413 atttttcgcctaataaactttacctcgaagttggaatgtaaagcta 458  Q
      || || | |||||||||| |||| ||||||||||||||||||||    
T  21321771 gcttgtctcttaataaacttcaccttgaagttggaatgtaaagcta 21321726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 32576969 - 32577036
Alignment:
Q  388 agctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 455  Q
    |||||| ||||||| || |||||||  || || ||||| |||||| ||||||||||||||||||||||    
T  32576969 agctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 32577036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 37245773 - 37245840
Alignment:
Q  388 agctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 455  Q
    |||||| ||||||| || |||||||  || || ||||| |||||| ||||||||||||||||||||||    
T  37245773 agctaaagtatgagcaaccatgttcgattgtctcctaacaaacttcacctcgaagttggaatgtaaag 37245840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 352 - 455
Target Start/End: Original strand, 44935967 - 44936070
Alignment:
Q  352 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 451  Q
    ||||||| |||||||| |  ||||||||| ||||  ||||||  |||||| || |||||||  || ||  |||| |||||| ||||||||||||||||||    
T  44935967 aaaaatacggtgactaacccaagaacatgccgtcatagctaaactatgagcaaccatgttcgcttgtctgctaacaaacttcacctcgaagttggaatgt 44936066  T
Q  452 aaag 455  Q
    ||||    
T  44936067 aaag 44936070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 674
Target Start/End: Original strand, 48569574 - 48569613
Alignment:
Q  635 accacaaccagcaacttcacaattgattcatcttccattt 674  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  48569574 accacaaccagcaacttcacaatgtattcatcttccattt 48569613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 49951579 - 49951512
Alignment:
Q  388 agctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 455  Q
    |||||| ||||||| || |||||||  || || ||||| |||||| ||||||||||||||||||||||    
T  49951579 agctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 49951512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 51259450 - 51259517
Alignment:
Q  388 agctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 455  Q
    ||||||| |||||| || |||||||  || || ||||| |||||| ||||||||||||||||||||||    
T  51259450 agctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 51259517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 523
Target Start/End: Original strand, 47376851 - 47376904
Alignment:
Q  470 cggtgccatttaatttgggaaagggaacttgtttcccatgatgaaaaagttgat 523  Q
    ||||| ||||||||||||||||||| | ||||||||||| |||  |||||||||    
T  47376851 cggtggcatttaatttgggaaaggggagttgtttcccatcatgggaaagttgat 47376904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 485 - 865
Target Start/End: Complemental strand, 6007688 - 6007289
Alignment:
Q  485 tgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattatt 584  Q
    |||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6007688 tgggaaagggaatttgtttcccatgatgggaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattatt 6007589  T
Q  585 ttcacattatctttcccaaccannnnnnnnnnnnnnnnnnnnnnnnaccaaccacaaccagcaacttcacaattgattcat------------------- 665  Q
    |||||| ||||||||| ||| |                        |||||||||||||||||||||||||||||||||||                       
T  6007588 ttcacactatctttccaaacaattctctctcttccatctctctctcaccaaccacaaccagcaacttcacaattgattcatcttctcacaattgattcat 6007489  T
Q  666 cttccatttgaacgaaaataaaacaattgcaccattacaatctattcatctttaatttccagatcttggtctttgtttaaatttaacctctatttaaatt 765  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6007488 cttccatttgaacgaagataaaacaattgcaccatcacaatctatccatctttaattttcagatcttggtctttgtttaaatttaacctctatttaaatt 6007389  T
Q  766 tcaattcgatcctctcttgaataagaagaaattcatgctaaaagccatcaagaatttaataatttaagaatttgttcaacatgaatgcagtagttttaga 865  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6007388 tcaattcgatcctctcttgaataagaagaaattcatgctaaaagccatcaagaatttaataatttaagaatttgttcaacattaatgcagtagttttaga 6007289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 352 - 455
Target Start/End: Original strand, 22767158 - 22767261
Alignment:
Q  352 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 451  Q
    ||||||| ||||||||||  ||||||||| || || |||||| ||||||| || ||||||| ||| || ||||| |||||| ||||||||||||||||||    
T  22767158 aaaaatacggtgactagcccaagaacatgccgccttagctaaagtatgagcaaccatgttcgtttgtctcctaacaaacttcacctcgaagttggaatgt 22767257  T
Q  452 aaag 455  Q
    ||||    
T  22767258 aaag 22767261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 352 - 455
Target Start/End: Complemental strand, 4268401 - 4268298
Alignment:
Q  352 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 451  Q
    ||||||| ||||||||||  ||||||||| || |  || ||| ||||||| || |||||||  || || |||||||||||| |||| |||||||||||||    
T  4268401 aaaaatacggtgactagcccaagaacatgccgccctagataaagtatgagcaaccatgttcgcttgtctcctaataaacttcaccttgaagttggaatgt 4268302  T
Q  452 aaag 455  Q
    ||||    
T  4268301 aaag 4268298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 352 - 454
Target Start/End: Complemental strand, 23075134 - 23075032
Alignment:
Q  352 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 451  Q
    ||||||| ||||||||||  ||||||||||||||  ||||||  |||||| || |||||||  || || ||||| |||||| ||||  ||||||||||||    
T  23075134 aaaaatacggtgactagcccaagaacatgtcgtcctagctaaactatgagcaaccatgttcgcttgtctcctaacaaacttcaccttaaagttggaatgt 23075035  T
Q  452 aaa 454  Q
    |||    
T  23075034 aaa 23075032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 308 - 368
Target Start/End: Complemental strand, 12779079 - 12779019
Alignment:
Q  308 atattattaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactag 368  Q
    |||||||||||||| || |||||| ||||| | |||||||||||| ||| |||||||||||    
T  12779079 atattattaatcaataattgttcattacaagtaggagaaatctcacaaacatggtgactag 12779019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 352 - 455
Target Start/End: Complemental strand, 27292735 - 27292633
Alignment:
Q  352 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 451  Q
    ||||||| ||||||||||  |||||||||||  || |||||| ||||||| || |||||||  || || ||| |||||||| || | |||||||||||||    
T  27292735 aaaaatacggtgactagcccaagaacatgtcccct-agctaaagtatgagcaaccatgttcgcttgtctcctgataaacttcactttgaagttggaatgt 27292637  T
Q  452 aaag 455  Q
    ||||    
T  27292636 aaag 27292633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 455
Target Start/End: Original strand, 27532811 - 27532894
Alignment:
Q  372 aagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 455  Q
    |||||||||||  |  |||||| |||| ||||| |||||||  || || ||||| |||||| ||||||||||||||||||||||    
T  27532811 aagaacatgtcaccctagctaaagtataagtaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 27532894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 475 - 586
Target Start/End: Original strand, 33001936 - 33002047
Alignment:
Q  475 ccatttaatttgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaaca 574  Q
    |||||||||||||||||||  | || |||||||  ||| ||||||||||  || ||||| |||||||| | ||  ||| | ||||||| ||||| |||||    
T  33001936 ccatttaatttgggaaaggagagttctttcccaccatggaaaagttgatcatgtccattagattaaatgaggaatacattcttatcatattctctcaaca 33002035  T
Q  575 ctgaattatttt 586  Q
    || |||||||||    
T  33002036 ctaaattatttt 33002047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 41940658 - 41940725
Alignment:
Q  388 agctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 455  Q
    |||||| |||| || ||||||||||  || || ||||| |||||| ||||||||||||||||||||||    
T  41940658 agctaaagtattagcaatcatgttctcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 41940725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 3e-44; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 471 - 586
Target Start/End: Original strand, 30544727 - 30544842
Alignment:
Q  471 ggtgccatttaatttgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcac 570  Q
    ||||||||||||||||||||| |||| |||||||||||||||  |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  30544727 ggtgccatttaatttgggaaatggaagttgtttcccatgatgggaaagttgattttagccatttgattaaataaagagtacactattatcatgttctcac 30544826  T
Q  571 aacactgaattatttt 586  Q
    ||||||||||||||||    
T  30544827 aacactgaattatttt 30544842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 471 - 586
Target Start/End: Complemental strand, 44155030 - 44154915
Alignment:
Q  471 ggtgccatttaatttgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcac 570  Q
    ||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  44155030 ggtgctatttaatttgggaaagggaagttgtttcccatgatggaaaagttgattttagccatttgattaaataaagagtacactattatcatgttctcac 44154931  T
Q  571 aacactgaattatttt 586  Q
    ||||| ||||||||||    
T  44154930 aacaccgaattatttt 44154915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 485 - 586
Target Start/End: Original strand, 8145558 - 8145659
Alignment:
Q  485 tgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattatt 584  Q
    |||| ||||||| |||||||| |||||   |||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  8145558 tggggaagggaagttgtttcctatgataggaaagttgattttagccatttgattaaataaagagtacactattatcatgttctcataacactgaattatt 8145657  T
Q  585 tt 586  Q
    ||    
T  8145658 tt 8145659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 471 - 541
Target Start/End: Complemental strand, 30545483 - 30545413
Alignment:
Q  471 ggtgccatttaatttgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaa 541  Q
    |||||||||||||||||||||||||| |||||||||||||||  ||||||  ||||  ||||| |||||||    
T  30545483 ggtgccatttaatttgggaaagggaagttgtttcccatgatgggaaagttttttttaaccattagattaaa 30545413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 389 - 458
Target Start/End: Original strand, 10244492 - 10244561
Alignment:
Q  389 gctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaagcta 458  Q
    ||||| ||||||| ||||||||||| ||  ||| |||||||||| |||||||||||||||| ||||||||    
T  10244492 gctaaagtatgagcaatcatgttcacttgccgcttaataaacttcacctcgaagttggaatctaaagcta 10244561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 471 - 512
Target Start/End: Original strand, 44154276 - 44154317
Alignment:
Q  471 ggtgccatttaatttgggaaagggaacttgtttcccatgatg 512  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  44154276 ggtgccatttaatttgggaaagggaagttgtttcccatgatg 44154317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 352 - 455
Target Start/End: Complemental strand, 9710257 - 9710154
Alignment:
Q  352 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 451  Q
    ||||||| ||| ||||||  |||||||   ||||| |||||| ||||||| || |||||||  || || ||||| |||||| ||||||||||||||||||    
T  9710257 aaaaatacggttactagcccaagaacagaccgtcttagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgt 9710158  T
Q  452 aaag 455  Q
    ||||    
T  9710157 aaag 9710154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 702 - 757
Target Start/End: Complemental strand, 44154844 - 44154789
Alignment:
Q  702 acaatctattcatctttaatttccagatcttggtctttgtttaaatttaacctcta 757  Q
    ||||| ||||||||||  |||||||||||||||||| ||||||| |||||||||||    
T  44154844 acaatgtattcatcttccatttccagatcttggtctctgtttaattttaacctcta 44154789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 674
Target Start/End: Original strand, 8145712 - 8145751
Alignment:
Q  635 accacaaccagcaacttcacaattgattcatcttccattt 674  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  8145712 accacaaccagcaacttcacaatgtattcatcttccattt 8145751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 702 - 757
Target Start/End: Original strand, 30544913 - 30544968
Alignment:
Q  702 acaatctattcatctttaatttccagatcttggtctttgtttaaatttaacctcta 757  Q
    ||||| |||| |||||  |||||||||||||||||| ||||||| |||||||||||    
T  30544913 acaatgtattgatcttctatttccagatcttggtctctgtttaattttaacctcta 30544968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 34695825 - 34695892
Alignment:
Q  388 agctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 455  Q
    |||||| ||||||| || |||||||  || || ||||| |||||| ||||||||||||||||||||||    
T  34695825 agctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 34695892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 34718237 - 34718304
Alignment:
Q  388 agctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 455  Q
    |||||| ||||||| || |||||||  || || ||||| |||||| ||||||||||||||||||||||    
T  34718237 agctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 34718304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 674
Target Start/End: Complemental strand, 44154862 - 44154823
Alignment:
Q  635 accacaaccagcaacttcacaattgattcatcttccattt 674  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  44154862 accacaaccagcaacttcacaatgtattcatcttccattt 44154823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 352 - 458
Target Start/End: Complemental strand, 88861 - 88755
Alignment:
Q  352 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 451  Q
    ||||||| ||||||||||  ||||||| | || |  |||||| ||||||| || |||||||  || || || ||||||||| || | |||||||||||||    
T  88861 aaaaatacggtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctccaaataaacttcacgttgaagttggaatgt 88762  T
Q  452 aaagcta 458  Q
    |||||||    
T  88761 aaagcta 88755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 702 - 756
Target Start/End: Original strand, 8145730 - 8145784
Alignment:
Q  702 acaatctattcatctttaatttccagatcttggtctttgtttaaatttaacctct 756  Q
    ||||| ||||||||||  |||| ||||||||||||| ||||||| ||||||||||    
T  8145730 acaatgtattcatcttccattttcagatcttggtctctgtttaattttaacctct 8145784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 7e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 485 - 604
Target Start/End: Complemental strand, 1770818 - 1770699
Alignment:
Q  485 tgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattatt 584  Q
    |||||||||||| | ||| |||||||||  ||||||||| || ||||||||||||||||||||||||||| ||||||||||||| | ||| |||||| ||    
T  1770818 tgggaaagggaagtagttccccatgatgggaaagttgatcttagccatttgattaaataaagagcacactcttatcatgttctccctacattgaattttt 1770719  T
Q  585 ttcacattatctttcccaac 604  Q
    ||||||||||||| ||||||    
T  1770718 ttcacattatcttccccaac 1770699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 468 - 520
Target Start/End: Original strand, 33077569 - 33077621
Alignment:
Q  468 tacggtgccatttaatttgggaaagggaacttgtttcccatgatgaaaaagtt 520  Q
    ||||||||| ||||||||||||||||||| || |||||| ||||| |||||||    
T  33077569 tacggtgccgtttaatttgggaaagggaagttctttcccttgatggaaaagtt 33077621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 352 - 455
Target Start/End: Original strand, 34104350 - 34104453
Alignment:
Q  352 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 451  Q
    ||||||| ||||||||||  ||||||||| || |  ||||||| |||||| || ||||||   || || ||||| |||||| ||||||||||| ||||||    
T  34104350 aaaaatacggtgactagcccaagaacatgccgccatagctaagctatgagcaaccatgtttgcttgtctcctaacaaacttcacctcgaagttcgaatgt 34104449  T
Q  452 aaag 455  Q
    ||||    
T  34104450 aaag 34104453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 485 - 604
Target Start/End: Original strand, 35839736 - 35839854
Alignment:
Q  485 tgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattatt 584  Q
    |||||||||||| |||||||||||||||| ||||||  ||||| | ||  |||||| ||| ||||||||| ||||||||||||| |||||||||||| ||    
T  35839736 tgggaaagggaagttgtttcccatgatgagaaagttttttttgactatcagattaagtaaggagcacactcttatcatgttctctcaacactgaatt-tt 35839834  T
Q  585 ttcacattatctttcccaac 604  Q
    |||||| |||||||||||||    
T  35839835 ttcacactatctttcccaac 35839854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 485 - 604
Target Start/End: Original strand, 33688237 - 33688353
Alignment:
Q  485 tgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattatt 584  Q
    |||||||||||| | ||||||||| |||  ||||||||| || ||||||||||||||||||||| ||||| |||| |||||||| |||||||||||  ||    
T  33688237 tgggaaagggaagtagtttcccat-atgggaaagttgatcttagccatttgattaaataaagagtacactcttattatgttctctcaacactgaat--tt 33688333  T
Q  585 ttcacattatctttcccaac 604  Q
    |||||| |||||| ||||||    
T  33688334 ttcacactatcttccccaac 33688353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 309 - 455
Target Start/End: Complemental strand, 11870609 - 11870463
Alignment:
Q  309 tattattaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcat 408  Q
    ||||||||| ||||||||||||||||||| | ||| ||   | ||||||||||||| ||||  ||||||| || | |  |||||| ||||||| || |||    
T  11870609 tattattaaccaacaaatgttcaatacaagtaggataagaataaaaaatatggtgattagcccaagaacaggttgccctagctaaagtatgagcaaccat 11870510  T
Q  409 gttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 455  Q
    ||||  || || ||||| |||||| ||||||||||| ||||||||||    
T  11870509 gttcgcttgtctcctaacaaacttcacctcgaagttagaatgtaaag 11870463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 313 - 455
Target Start/End: Original strand, 40588576 - 40588718
Alignment:
Q  313 attaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttc 412  Q
    |||||||||| ||||||||||||||   ||| |||  | ||||||| ||||||||||  ||||||| | || |  |||||| ||||| | ||||||||||    
T  40588576 attaatcaactaatgttcaatacaagaaggataaaaataaaaaatacggtgactagcccaagaacaggccgccctagctaaagtatgtgcaatcatgttc 40588675  T
Q  413 atttttcgcctaataaactttacctcgaagttggaatgtaaag 455  Q
      || || ||||| |||||| ||||||||||||||||||||||    
T  40588676 gcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 40588718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 313 - 455
Target Start/End: Original strand, 477902 - 478044
Alignment:
Q  313 attaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttc 412  Q
    |||||||||| ||||||||||||||   ||| ||   | ||||||| ||||| ||||  ||||||| | || |  |||||||||||||| || |||||||    
T  477902 attaatcaaccaatgttcaatacaagaaggataagaataaaaaatacggtgattagcccaagaacaggacgccctagctaaggtatgagcaaccatgttc 478001  T
Q  413 atttttcgcctaataaactttacctcgaagttggaatgtaaag 455  Q
      || || ||||| |||||| |||| |||||||||||||||||    
T  478002 gcttgtctcctaacaaacttcaccttgaagttggaatgtaaag 478044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 469 - 543
Target Start/End: Complemental strand, 43925068 - 43924994
Alignment:
Q  469 acggtgccatttaatttgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaata 543  Q
    |||||| | ||||||||||||||||||| ||||||||||  |||| |||||| |||||| || || |||||||||    
T  43925068 acggtggcgtttaatttgggaaagggaagttgtttcccaccatgagaaagttaattttgaccgttagattaaata 43924994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 313 - 469
Target Start/End: Complemental strand, 13415364 - 13415208
Alignment:
Q  313 attaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttc 412  Q
    |||||||||| ||||||||||||||   ||| |||  | ||||||| ||||||||||  |||||||   || |  |||||| ||||||| || |||||||    
T  13415364 attaatcaaccaatgttcaatacaagaaggataaaaataaaaaatacggtgactagcccaagaacagaccgccctagctaaagtatgagcaaccatgttc 13415265  T
Q  413 atttttcgcctaataaactttacctcgaagttggaatgtaaagctactttataaata 469  Q
      || || ||||  |||||| |||| ||||||||||||||||| || || |||||||    
T  13415264 gcttgtctcctagcaaacttcaccttgaagttggaatgtaaagataattgataaata 13415208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 469 - 507
Target Start/End: Original strand, 43924488 - 43924526
Alignment:
Q  469 acggtgccatttaatttgggaaagggaacttgtttccca 507  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  43924488 acggtggcatttaatttgggaaagggaagttgtttccca 43924526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 485 - 604
Target Start/End: Complemental strand, 9129 - 9009
Alignment:
Q  485 tgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaa-ttat 583  Q
    |||||||||||| | ||||  |||||||  ||||||||| || ||||||||||||||||||||||||||| ||||||||||||| | ||| |||| || |    
T  9129 tgggaaagggaagtagtttttcatgatgggaaagttgatcttagccatttgattaaataaagagcacactcttatcatgttctccctacattgaattttt 9030  T
Q  584 tttcacattatctttcccaac 604  Q
    |||||||||||||| ||||||    
T  9029 tttcacattatcttccccaac 9009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 485 - 597
Target Start/End: Complemental strand, 47800213 - 47800101
Alignment:
Q  485 tgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaacactgaattatt 584  Q
    |||||||||||| | ||| |||||||||  |||||||||  | | ||||||||||||||||||||||||| ||||||||||||| | ||| |||||| ||    
T  47800213 tgggaaagggaagtagttccccatgatgggaaagttgatcatagtcatttgattaaataaagagcacactcttatcatgttctccctacattgaattttt 47800114  T
Q  585 ttcacattatctt 597  Q
    |||||||||||||    
T  47800113 ttcacattatctt 47800101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 455
Target Start/End: Original strand, 9328448 - 9328590
Alignment:
Q  313 attaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttc 412  Q
    |||||||||| ||||||||||||||   ||| |||  | ||||||| ||||||||||  ||||| | | ||||  |||||| ||||||| || |||||||    
T  9328448 attaatcaaccaatgttcaatacaagaaggataaaaattaaaaatacggtgactagcccaagaataggacgtcgtagctaaagtatgagcaaccatgttc 9328547  T
Q  413 atttttcgcctaataaactttacctcgaagttggaatgtaaag 455  Q
      || || ||||| |||||| || |||||||||||||||||||    
T  9328548 gcttgtctcctaacaaacttcacatcgaagttggaatgtaaag 9328590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 455
Target Start/End: Complemental strand, 16732274 - 16732132
Alignment:
Q  313 attaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttc 412  Q
    |||||||||| |||||||||||||||  ||| ||   | ||||||| ||||||||||  |||||||   || |  |||||| ||||||| || |||||||    
T  16732274 attaatcaaccaatgttcaatacaaaaaggataagaataaaaaatacggtgactagcccaagaacagtccgccctagctaaagtatgagcaaccatgttc 16732175  T
Q  413 atttttcgcctaataaactttacctcgaagttggaatgtaaag 455  Q
      || || ||||| |||||| ||||||||||||||||||||||    
T  16732174 gcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 16732132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 455
Target Start/End: Complemental strand, 17710408 - 17710266
Alignment:
Q  313 attaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttc 412  Q
    |||||||||| |||||||||||||||  ||| ||   | ||||||| ||||||||||  |||||||   || |  |||||| ||||||| || |||||||    
T  17710408 attaatcaaccaatgttcaatacaaaaaggataagaataaaaaatacggtgactagcccaagaacagtccgccctagctaaagtatgagcaaccatgttc 17710309  T
Q  413 atttttcgcctaataaactttacctcgaagttggaatgtaaag 455  Q
      || || ||||| |||||| ||||||||||||||||||||||    
T  17710308 gcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 17710266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 313 - 455
Target Start/End: Complemental strand, 24251777 - 24251638
Alignment:
Q  313 attaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttc 412  Q
    |||||||||| ||||||||||||||   ||| ||   | ||||||| ||||||||||  ||||||| | || |  |||||| ||||||| || |||||||    
T  24251777 attaatcaaccaatgttcaatacaa---ggataagaattaaaaatacggtgactagctcaagaacaggccgccctagctaaagtatgagcaaccatgttc 24251681  T
Q  413 atttttcgcctaataaactttacctcgaagttggaatgtaaag 455  Q
      || || ||||| |||||| ||||||||||||||||||||||    
T  24251680 gcttgtctcctaacaaacttcacctcgaagttggaatgtaaag 24251638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 29200876 - 29200943
Alignment:
Q  388 agctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgtaaag 455  Q
    |||||| ||||||| || ||||||| ||| || ||||| |||||| ||||||||||||||||||||||    
T  29200876 agctaaagtatgagcaaccatgttcgtttgtctcctaacaaacttcacctcgaagttggaatgtaaag 29200943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 352 - 455
Target Start/End: Complemental strand, 44481389 - 44481286
Alignment:
Q  352 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 451  Q
    ||||||||||||||||||  ||||||| | || |  |||||| ||||||| || |||||||  || || ||||| |||||| |||||||||||| |||||    
T  44481389 aaaaatatggtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttgaaatgt 44481290  T
Q  452 aaag 455  Q
    ||||    
T  44481289 aaag 44481286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 562
Target Start/End: Original strand, 46251434 - 46251481
Alignment:
Q  515 aaagttgattttggccatttgattaaataaagagcacactattatcat 562  Q
    |||||||||||| |||||| |||||| ||||||||||| |||||||||    
T  46251434 aaagttgattttagccattagattaattaaagagcacaatattatcat 46251481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 469 - 519
Target Start/End: Complemental strand, 41195416 - 41195366
Alignment:
Q  469 acggtgccatttaatttgggaaagggaacttgtttcccatgatgaaaaagt 519  Q
    ||||||||||||||||||||||||  ||||| |||||||| ||| ||||||    
T  41195416 acggtgccatttaatttgggaaagcaaacttctttcccatcatggaaaagt 41195366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 418 - 452
Target Start/End: Original strand, 43782988 - 43783022
Alignment:
Q  418 tcgcctaataaactttacctcgaagttggaatgta 452  Q
    ||||| |||||||||||||||||||||||||||||    
T  43782988 tcgccgaataaactttacctcgaagttggaatgta 43783022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 369
Target Start/End: Complemental strand, 6216639 - 6216578
Alignment:
Q  308 atattattaatcaacaaatgttcaatacaaatcggagaaatctcaaaaatatggtgactagc 369  Q
    ||||||||||| |  ||||||||||||||||  ||||||||||| |||| ||||||| ||||    
T  6216639 atattattaataaggaaatgttcaatacaaaaaggagaaatctcgaaaacatggtgattagc 6216578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 542
Target Start/End: Original strand, 7677415 - 7677488
Alignment:
Q  469 acggtgccatttaatttgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaat 542  Q
    ||||| |||||||||||||||||||  | || |||||||  ||||||||||||||  || ||||| ||||||||    
T  7677415 acggtaccatttaatttgggaaaggagaattctttcccaccatgaaaaagttgatcatgtccattagattaaat 7677488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 586
Target Start/End: Complemental strand, 7677855 - 7677742
Alignment:
Q  473 tgccatttaatttgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttctcacaa 572  Q
    |||||||||||||||||||||  | || |||||||  |||  |||||||||  ||  |||| |||||||| | || |||| | ||||||| ||||| |||    
T  7677855 tgccatttaatttgggaaaggagagttctttcccaccatgggaaagttgatcatgttcattagattaaatgaggaacacattcttatcatattctctcaa 7677756  T
Q  573 cactgaattatttt 586  Q
    |||| |||||||||    
T  7677755 cactaaattatttt 7677742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 468 - 586
Target Start/End: Original strand, 27218 - 27336
Alignment:
Q  468 tacggtgccatttaatttgggaaagggaacttgtttcccatgatgaaaaagttgattttggccatttgattaaataaagagcacactattatcatgttct 567  Q
    ||||||||||||||||||||||||||  | || |||||||| |||  |||||||||  || ||||| |||||||| | || |||| | |||||||  |||    
T  27218 tacggtgccatttaatttgggaaaggagagttctttcccatcatgggaaagttgatcatgtccattagattaaatgaggaacacattcttatcatactct 27317  T
Q  568 cacaacactgaattatttt 586  Q
    | ||||||| |||||||||    
T  27318 ctcaacactaaattatttt 27336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 568
Target Start/End: Original strand, 15124 - 15175
Alignment:
Q  517 agttgattttggccatttgattaaataaagagcacactattatcatgttctc 568  Q
    |||||||||| ||||||||||||||||| ||||||| | |||||||| ||||    
T  15124 agttgattttagccatttgattaaataatgagcacaatcttatcatgctctc 15175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 516 - 562
Target Start/End: Original strand, 67292 - 67338
Alignment:
Q  516 aagttgattttggccatttgattaaataaagagcacactattatcat 562  Q
    ||||||||||| |||||| ||||||||||||| |||||| |||||||    
T  67292 aagttgattttagccattggattaaataaagaacacacttttatcat 67338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 352 - 453
Target Start/End: Original strand, 149 - 250
Alignment:
Q  352 aaaaatatggtgactagcataagaacatgtcgtctgagctaaggtatgagtaatcatgttcatttttcgcctaataaactttacctcgaagttggaatgt 451  Q
    ||||||| ||||||||||  ||||||| ||||||  || ||| ||||||| || | |||||  || || ||||| |||||| || |||||||||||||||    
T  149 aaaaatacggtgactagcccaagaacaagtcgtcctagttaaagtatgagcaaccgtgttcgcttgtctcctaacaaacttcacatcgaagttggaatgt 248  T
Q  452 aa 453  Q
    ||    
T  249 aa 250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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