View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4362_low_2 (Length: 406)
Name: NF4362_low_2
Description: NF4362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4362_low_2 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 143178 - 142800
Alignment:
| Q |
18 |
ctaagcacaaaaaccagctcaaaattggtgtcttcttaaactttaagtcacaatagcttctaccttgaagtttctcgaaactaatacctgcttcactcaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
143178 |
ctaagcacaaaaaccagctcaaaattggtgtcttcttaaactttaagtcacaatagcttctaccttgaagtttctcgaaactaataccagcttcactcaa |
143079 |
T |
|
| Q |
118 |
ctttgtagctgttcttagtacatattccgatctaaaaggtgcgaaactttttgatggattcacaccctttacttgaatttctcttggaagataagtatat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
143078 |
ctttgtagctgttcttagtacatattccgatctaaaaggtgcgaaactttttgatggattcacaccctttacttgaatttctcttggaagataagtatat |
142979 |
T |
|
| Q |
218 |
ctaatcaaatcagtgaaatggttgcaagatttgcaattttgagtcaactccaatttttgacttattaacttttgaggataataatcttcaaagtatttaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
142978 |
ctaatcaaatcagtgaaatggttgcaagatttgcaattttgagtcaactccaatttttgacttattaacttttgaggataataatcttcaaagtatttaa |
142879 |
T |
|
| Q |
318 |
aagcaagatcaataaaactaacacaattttccttattgctattgcaaccattattttcaactaataacacccctctgtg |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
142878 |
aagcaagatcaataaaactaacacaattttccttattgctattgcaaccattattttcaactaataacacccctctgtg |
142800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 21 - 386
Target Start/End: Complemental strand, 298559 - 298196
Alignment:
| Q |
21 |
agcacaaaaaccagctcaaaattggtgtcttcttaaactttaagtcacaatagcttctaccttgaagtttctcgaaactaatacctgcttcactcaactt |
120 |
Q |
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||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||| |||||||| |
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| T |
298559 |
agcacaaaacccatctcaaaattgatgtcttcttaaactttaagtcacaatagcttctaccttgaactttctcaaagctaatacctgcttccctcaactt |
298460 |
T |
|
| Q |
121 |
tgtagctgttcttagtac-atattccgatctaaaaggtgcgaaactttttgatggattcacaccctttacttgaatttctcttggaagataagtatatct |
219 |
Q |
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|||||||||||||||||| |||||| |||| |||||||| || ||||| ||||||| ||| ||| || |||||||||||||||||||||||||||||||| |
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| T |
298459 |
tgtagctgttcttagtacaatattctgatcaaaaaggtgtgatactttgtgatggactcataccattaacttgaatttctcttggaagataagtatatct |
298360 |
T |
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| Q |
220 |
aatcaaatcagtgaaatggttgcaagatttgcaattttgagtcaactccaatttttgacttattaacttttgaggataataatcttcaaagtatttaaaa |
319 |
Q |
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|||||||||| |||| || |||||||||||||||||| ||||||||||||| |||| || |||||||||||||||||||| |||||||||| |||||| |
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| T |
298359 |
aatcaaatcaatgaagtgtttgcaagatttgcaatttggagtcaactccaagtttttac---ttaacttttgaggataataaacttcaaagtagttaaaa |
298263 |
T |
|
| Q |
320 |
gcaagatcaataaaactaacacaattttccttattgctattgcaaccattattttcaactaataaca |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| |
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| T |
298262 |
gcaagatcaataaaactaacacaattttccttattgctattgaaaccattcttttcacctaataaca |
298196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 79 - 389
Target Start/End: Original strand, 45960562 - 45960869
Alignment:
| Q |
79 |
accttgaagtttctcgaaactaatacctgcttcactcaactttgtagctgttcttagtacatattccgatctaaaaggtgcgaaactttttgatggattc |
178 |
Q |
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|||||||| |||||| || |||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| |||||||||| |
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| T |
45960562 |
accttgaactttctcaaatctaatatctgcttcactcaactttgtagctgttcttagtgcatattctgatctaaaaggtgtgaaactttgtgatggattc |
45960661 |
T |
|
| Q |
179 |
acaccctttacttgaatttctcttggaagataagtatatctaatcaaatcagtgaaatggttgcaagatttgcaattttgagtcaactccaatttttgac |
278 |
Q |
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| T |
45960662 |
ataccattaacttgaatttctcttggaagataagtatatctaatcaaatcagcgaagtgtttgcaagatttgcaattttgagtcaactccaattttttac |
45960761 |
T |
|
| Q |
279 |
ttattaacttttgaggataataatcttcaaagtatttaaaagcaagatcaataaaactaacacaattttccttattgctattgcaaccattattttcaac |
378 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| | |
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| T |
45960762 |
---ttaacttttgaggataataatcttcaaagtagttaaaagcaagatcaataaaactaaggcaattttccttattgctattgcaaccattcttttcacc |
45960858 |
T |
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| Q |
379 |
taataacaccc |
389 |
Q |
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||||||||||| |
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| T |
45960859 |
taataacaccc |
45960869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 45958484 - 45958549
Alignment:
| Q |
18 |
ctaagcacaaaaaccagctcaaaattggtgtcttcttaaactttaagtcacaatagcttctacctt |
83 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45958484 |
ctaagcacaaaaaccagctcaaaattggtgtcttcttaaactttaagtcacaatagcatctacctt |
45958549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 25539470 - 25539350
Alignment:
| Q |
22 |
gcacaaaaaccagctcaaaattggtgtcttcttaaactttaagtcacaatagcttctaccttgaagtttctcgaaactaatacctgcttcactcaacttt |
121 |
Q |
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||||||||||||| | | |||||| || || |||||||||| || |||||||| |||||| | |||||| || |||||| | |||||| |||||||| |
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| T |
25539470 |
gcacaaaaaccagttgagaattggggttttgttaaactttatttccaaatagcttttaccttatactttctcaaagctaatatccgcttcattcaacttt |
25539371 |
T |
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| Q |
122 |
gtagctgttcttagtacatat |
142 |
Q |
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|| || ||| ||||||||||| |
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| T |
25539370 |
gttgcagtttttagtacatat |
25539350 |
T |
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