View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4363-Insertion-1 (Length: 1100)

Name: NF4363-Insertion-1
Description: NF4363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4363-Insertion-1
NF4363-Insertion-1
[»] chr3 (4 HSPs)
chr3 (7-1069)||(2620805-2621877)
chr3 (258-592)||(36549044-36549370)
chr3 (347-462)||(2606523-2606638)
chr3 (685-761)||(39161256-39161332)
[»] scaffold0019 (1 HSPs)
scaffold0019 (494-788)||(112765-113057)
[»] chr1 (5 HSPs)
chr1 (494-788)||(9324872-9325168)
chr1 (55-126)||(44928123-44928194)
chr1 (856-905)||(9325218-9325267)
chr1 (247-306)||(14128599-14128658)
chr1 (57-163)||(6292523-6292628)
[»] chr8 (8 HSPs)
chr8 (350-462)||(26370707-26370819)
chr8 (345-409)||(16520834-16520898)
chr8 (347-462)||(16589303-16589418)
chr8 (347-439)||(16529319-16529411)
chr8 (247-302)||(34563137-34563192)
chr8 (254-292)||(29206095-29206133)
chr8 (245-286)||(8578525-8578566)
chr8 (569-618)||(26370559-26370608)
[»] chr5 (7 HSPs)
chr5 (247-303)||(912995-913051)
chr5 (107-168)||(31688064-31688125)
chr5 (245-280)||(6738533-6738568)
chr5 (246-305)||(16270816-16270875)
chr5 (253-303)||(7554668-7554718)
chr5 (245-306)||(26516181-26516242)
chr5 (253-306)||(28981889-28981942)
[»] scaffold1194 (1 HSPs)
scaffold1194 (347-462)||(122-237)
[»] chr7 (2 HSPs)
chr7 (140-203)||(44821949-44822012)
chr7 (252-305)||(24545675-24545728)
[»] chr6 (2 HSPs)
chr6 (253-306)||(14340937-14340990)
chr6 (253-306)||(4247218-4247271)
[»] scaffold0085 (1 HSPs)
scaffold0085 (253-311)||(26175-26233)
[»] chr4 (1 HSPs)
chr4 (245-306)||(24193468-24193529)
[»] chr2 (1 HSPs)
chr2 (245-302)||(2400043-2400100)


Alignment Details
Target: chr3 (Bit Score: 916; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 916; E-Value: 0
Query Start/End: Original strand, 7 - 1069
Target Start/End: Original strand, 2620805 - 2621877
Alignment:
Q  7 aagttgcaactgaggtggatactttttcttttgagatacactaagagttaatttgagcttatttactagtataagaacttttaatattgattgggagaat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2620805 aagttgcaactgaggtggatactttttcttttgagatacactaagagttaatttgagcttatttactagtataagaacttttaatattgtttgggagaat 2620904  T
Q  107 ttatagaaactgcttatgacgtgtctctaagccgttttcaacgtattttcataagctgtacagaatagcttgtgaaaacagctcgtaacttatacaagaa 206  Q
    ||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2620905 ttacagaaactgcttatgacgtgtctctaagccattttcaacttattttcataagctgtacagaatagcttgtgaaaacagctcgtaacttatacaagaa 2621004  T
Q  207 aacaatgactttatttattttgtatttaaacagcataaacataagtacttatatgataagtgtttatgcaataagcatttcattaagttatttatccaaa 306  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  2621005 aacaatgactttatttattttgtatttaaatagcataaacataagtacttatattataagtgtttatgcaataagcatttcattaagttgtttatccaaa 2621104  T
Q  307 aagggcttcaatgtcttcttaaaatatcaatggtgctgatttgatttcagtgtaattttcaacacactatttggcctttgcacaagtttttggatggctg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621105 aagggcttcaatgtcttcttaaaatatcaatggtgctgatttgatttcagtataattttcaacacactatttggcctttgcacaagtttttggatggctg 2621204  T
Q  407 ttacgatgagattcattcttggaggtttaaatgatttgcttggaccaatgaaggtatcacccaaaacaatttatattaaatgtttggatttgtatacttg 506  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2621205 ttacgatgagattcgttcttggaggtttaaatggtttgcttggaccaatgaaggtatcactcaaaacaatttatattaaatgtttggatttgtatacttg 2621304  T
Q  507 aatatctcaaattatctatataatttgtttattataacctccttcgttaataggcttattcttctgaaatttttcgagaagaataccaagctttaggaca 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2621305 aatatctcaaattatctatataatttgtttattataacctccttcgttaataggcttattcttctgaaatttttagagaagaataccaagctttaggaca 2621404  T
Q  607 atcaactgtaagtctcacaaacctttgtttatcgtttctttggaccacatcaccattgttgtaatgattcaaactataatctgatttcaggttgcagctg 706  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2621405 atcaactgtaagtctcacaaacctttgtttatcgtttctttgaaccacatcaccgttgttgtaatgattcaaactataatctgatttcaggttgcagctg 2621504  T
Q  707 cttggggagtaggtttggtcttcggaccagcgttgggaggttatttggctcaggtaatattttgtctgtttttcatttgttccttctgggataaaacaat 806  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||    
T  2621505 cttggggagtaggattggtcttcggaccagcgttgggaggttatttggctcaggtaatatttcttttgtttttcatttgttccttctgggataaaacaat 2621604  T
Q  807 tcagaaaaagtcatggattttaacatggacttgagataacttgtattgcaagacatgagttgctattccatttgtgtcccaaagtttaggtactacctcg 906  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2621605 tcagaaaaagtcatggattttaacatggacttgagataacttgtattgcaagacatgagttgctattccatttgtgtcccaaaatttaggtactacctcg 2621704  T
Q  907 gtataagtataagctttcgtttctttgg-aaaacttgtccctaaatataagctctatttcaaaatactcattacatttttccgaaatctacac----tat 1001  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    | |    
T  2621705 gtataagtataagctttcgtttctttggaaaaacttgtccctaaatataagctctatttcaaaatactcattgcattttttcgaaatctacaccttattt 2621804  T
Q  1002 atactactaa-tcg-tttggaaga-gaaaagtcgg-atttgacacatttatac-caatgtacactaataacat 1069  Q
    |||||||||| ||| ||||||||| |||||||||| ||||||||||||||||| |||||||||||||| ||||    
T  2621805 atactactaattcgttttggaagaggaaaagtcggaatttgacacatttatacacaatgtacactaattacat 2621877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 258 - 592
Target Start/End: Original strand, 36549044 - 36549370
Alignment:
Q  258 tatgataagtgtttatgcaataagcatttcattaagttatttatccaaaaagggcttcaatgtcttcttaaaatatcaatggtgctgatttgatttcagt 357  Q
    |||||||||| ||||||| || |||| ||  ||||||| |||||| |||||| |||| |||||||||| | |||||||||||||||||||| ||||||||    
T  36549044 tatgataagtatttatgctattagcaattagttaagttgtttatcaaaaaagagcttgaatgtcttctcataatatcaatggtgctgatttaatttcagt 36549143  T
Q  358 gtaattttcaacacactatttggcctttgcacaagtttttggatggctgttacgatgagattcattcttggaggtttaaatgatttgcttggaccaatga 457  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||        ||||  || ||||||||||||||| ||||||||||| |||||    
T  36549144 gtaattttcaacacactatttggcctttgcacaagcttttgggtggctgt--------gatttgtttttggaggtttaaatggtttgcttggactaatga 36549235  T
Q  458 aggtatcacccaaaacaatttatattaaatgtttggatttgtatacttgaatatctcaaattatctatataatttgtttattataacctccttcgttaat 557  Q
    | ||||||| ||||||| | |||| ||||||||||| || |||| ||||||||||| || |||| | |||| ||||||||| ||||||| |||| |||||    
T  36549236 atgtatcactcaaaacactctatactaaatgtttggcttagtattcttgaatatcttaatttatttttatagtttgtttatcataaccttcttcattaat 36549335  T
Q  558 aggcttattcttctgaaatttttcgagaagaatac 592  Q
    |||||||||||||| |||| | | |||||||||||    
T  36549336 aggcttattcttctaaaatctgtagagaagaatac 36549370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 347 - 462
Target Start/End: Original strand, 2606523 - 2606638
Alignment:
Q  347 ttgatttcagtgtaattttcaacacactatttggcctttgcacaagtttttggatggctgttacgatgagattcattcttggaggtttaaatgatttgct 446  Q
    ||||||||||| | || ||||||||||||||||||||| |||| |||||||||||||||||||| | | | ||  |||||||| ||||||||| ||||||    
T  2606523 ttgatttcagtatcatcttcaacacactatttggccttagcacgagtttttggatggctgttacaacgcggttttttcttggatgtttaaatggtttgct 2606622  T
Q  447 tggaccaatgaaggta 462  Q
    ||||||||||||||||    
T  2606623 tggaccaatgaaggta 2606638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 685 - 761
Target Start/End: Original strand, 39161256 - 39161332
Alignment:
Q  685 atctgatttcaggttgcagctgcttggggagtaggtttggtcttcggaccagcgttgggaggttatttggctcaggt 761  Q
    |||||| |||||||||  || ||||||||||||||||| ||| | || ||||| || ||||||||||||||||||||    
T  39161256 atctgacttcaggttgtggcagcttggggagtaggtttagtcattggtccagcattaggaggttatttggctcaggt 39161332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 101; Significance: 2e-49; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 494 - 788
Target Start/End: Complemental strand, 113057 - 112765
Alignment:
Q  494 atttgtatacttgaatatctcaaattatctatataatttgtttattataacctccttcgttaataggcttattcttctgaaatttttcgagaagaatacc 593  Q
    ||||| ||||||||||||||||| |||| | |||||||||||||      |||||| | |||||||||||||| || |||||||||| ||||||||| ||    
T  113057 atttgaatacttgaatatctcaatttatttttataatttgttta------cctcctacattaataggcttattattttgaaatttttagagaagaatgcc 112964  T
Q  594 aagctttaggacaatcaactgtaagtctcacaaacctttgtttatcgtttctttggaccacatcacc------attgttgtaatgattcaaactataatc 687  Q
    |||||||||||||||||||| ||| || ||||||||||||| |||| |||||||| | |||| | ||      |||||| |||| ||||||||  ||||     
T  112963 aagctttaggacaatcaactctaactcacacaaacctttgtgtatcatttctttgaatcacacctccattgttattgttataatcattcaaac--taat- 112867  T
Q  688 tgatttcaggttgcagctgcttggggagtaggtttggtcttcggaccagcgttgggaggtta-tttggctcaggtaatattttgtctgtttttcatttgt 786  Q
    |||||||| |||||||||||||||| ||||||||||||||| |||||||| |||||  |||| |||| ||  ||||||||||||| ||||| ||||||||    
T  112866 tgatttcacgttgcagctgcttgggtagtaggtttggtctttggaccagccttgggttgttagtttgcctagggtaatattttgtttgtttatcatttgt 112767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 1e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 494 - 788
Target Start/End: Original strand, 9324872 - 9325168
Alignment:
Q  494 atttgtatacttgaatatctcaaattatctatataatttgtttattataacctccttcgttaataggcttattcttctgaaatttttcgagaagaatacc 593  Q
    ||||| ||||||||||||||||| |||| | ||||||||||||||  ||||||||| | |||||||||||||| |  |||||||| | ||||||||| ||    
T  9324872 atttgaatacttgaatatctcaatttatttttataatttgtttatcgtaacctcctacattaataggcttattatcttgaaatttgtagagaagaatgcc 9324971  T
Q  594 aagctttaggacaatcaactgtaagtctcacaaacctttgtttatcgtttctttggaccacatcacc------attgttgtaatgattcaaactataatc 687  Q
    |||||||||||||||||||| |||  ||||||||||||||| |||| |||||||| | |||| | ||      |||||| |||| |||||||||| |       
T  9324972 aagctttaggacaatcaactctaa--ctcacaaacctttgtctatcatttctttgaatcacacctccattgttattgttataatcattcaaactaga--- 9325066  T
Q  688 tgatttcaggttgcagctgcttggggagtaggtttggtcttcggaccagcgttgggaggtta-tttggctcaggtaatattttgtctgtttttcatttgt 786  Q
    |||||||| |||||||||||||||| ||||||||||||||| |||||||| |||||  |||| |||| ||  ||||||||||  | ||||| ||||||||    
T  9325067 tgatttcacgttgcagctgcttgggtagtaggtttggtctttggaccagccttgggttgttagtttgcctagggtaatatttattttgtttatcatttgt 9325166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 44928123 - 44928194
Alignment:
Q  55 taatttgagcttatttactagtataagaacttttaatattgattgggagaatttatagaaactgcttatgac 126  Q
    ||||||||||||||||||||||||||| |||| ||| |||| |||| |||| ||||||||||  ||||||||    
T  44928123 taatttgagcttatttactagtataagcacttgtaagattgtttggaagaacttatagaaacaacttatgac 44928194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 856 - 905
Target Start/End: Original strand, 9325218 - 9325267
Alignment:
Q  856 aagacatgagttgctattccatttgtgtcccaaagtttaggtactacctc 905  Q
    ||||||| |||||| ||||||||||| ||||||||||||||||| |||||    
T  9325218 aagacattagttgccattccatttgtctcccaaagtttaggtaccacctc 9325267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 14128599 - 14128658
Alignment:
Q  247 ataagtacttatatgataagtgtttatgcaataagcatttcattaagttatttatccaaa 306  Q
    ||||| ||||||||||||||| ||||| | ||||||||||  ||||||| ||||||||||    
T  14128599 ataagcacttatatgataagtctttatactataagcatttatttaagttgtttatccaaa 14128658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 6292628 - 6292523
Alignment:
Q  57 atttgagcttatttactagtataagaacttttaatattgattgggagaatttatagaaactgcttatgacgtgtctctaagccgttttcaacgtattttc 156  Q
    |||||||||||| ||||   ||||| |||||| | |||| |||||||||||| || |||| ||||||||| |||   ||||| ||||||| | |||||||    
T  6292628 atttgagcttatctactgacataagcacttttgagattgtttgggagaattttta-aaacagcttatgacatgttcataagctgttttcagcttattttc 6292530  T
Q  157 ataagct 163  Q
    |||||||    
T  6292529 ataagct 6292523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 5e-28; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 350 - 462
Target Start/End: Complemental strand, 26370819 - 26370707
Alignment:
Q  350 atttcagtgtaattttcaacacactatttggcctttgcacaagtttttggatggctgttacgatgagattcattcttggaggtttaaatgatttgcttgg 449  Q
    |||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||| |   | ||  |||||||| ||||||||| |||||||||    
T  26370819 atttcagtatcattttcaacacactatttggccttagcacaagtttttggatggctgttacaacacggttttttcttggaagtttaaatggtttgcttgg 26370720  T
Q  450 accaatgaaggta 462  Q
    |||||||||||||    
T  26370719 accaatgaaggta 26370707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 345 - 409
Target Start/End: Complemental strand, 16520898 - 16520834
Alignment:
Q  345 atttgatttcagtgtaattttcaacacactatttggcctttgcacaagtttttggatggctgtta 409  Q
    |||||||||||||||  || |||||||||| ||||||||| | || |||||||||||||||||||    
T  16520898 atttgatttcagtgtcgttctcaacacactttttggccttagtacgagtttttggatggctgtta 16520834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 347 - 462
Target Start/End: Complemental strand, 16589418 - 16589303
Alignment:
Q  347 ttgatttcagtgtaattttcaacacactatttggcctttgcacaagtttttggatggctgttacgatgagattcattcttggaggtttaaatgatttgct 446  Q
    ||||||||||||| |||||||||||| |||| |||||| | ||  |||||||||||||| || | |  |||||  |||| |||||||||||||   ||||    
T  16589418 ttgatttcagtgtcattttcaacacattattcggccttagtacgggtttttggatggctattgccaccagatttcttctcggaggtttaaatggcgtgct 16589319  T
Q  447 tggaccaatgaaggta 462  Q
    ||||||| | ||||||    
T  16589318 tggaccagttaaggta 16589303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 347 - 439
Target Start/End: Complemental strand, 16529411 - 16529319
Alignment:
Q  347 ttgatttcagtgtaattttcaacacactatttggcctttgcacaagtttttggatggctgttacgatgagattcattcttggaggtttaaatg 439  Q
    ||||||||||||| |||||||||||| ||||||||||| | ||  ||| |||||||||| |||  | ||||||  |||| ||| |||||||||    
T  16529411 ttgatttcagtgtcattttcaacacattatttggccttagtacgggttattggatggctattatcacgagatttcttctcggaagtttaaatg 16529319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 302
Target Start/End: Complemental strand, 34563192 - 34563137
Alignment:
Q  247 ataagtacttatatgataagtgtttatgcaataagcatttcattaagttatttatc 302  Q
    ||||| ||||||||||||| ||||||||| |||||| ||| |||||||| ||||||    
T  34563192 ataagcacttatatgataaatgtttatgctataagcgtttaattaagttgtttatc 34563137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 29206133 - 29206095
Alignment:
Q  254 cttatatgataagtgtttatgcaataagcatttcattaa 292  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  29206133 cttatatgttaagtgtatatgcaataagcatttcattaa 29206095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 8578566 - 8578525
Alignment:
Q  245 acataagtacttatatgataagtgtttatgcaataagcattt 286  Q
    ||||||| |||||||||||||||| |||||| ||||||||||    
T  8578566 acataagcacttatatgataagtgcttatgctataagcattt 8578525  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 569 - 618
Target Start/End: Complemental strand, 26370608 - 26370559
Alignment:
Q  569 tctgaaatttttcgagaagaataccaagctttaggacaatcaactgtaag 618  Q
    ||||||||||||||||||||| | |||||||| ||||  |||||||||||    
T  26370608 tctgaaatttttcgagaagaaaagcaagcttttggactctcaactgtaag 26370559  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 912995 - 913051
Alignment:
Q  247 ataagtacttatatgataagtgtttatgcaataagcatttcattaagttatttatcc 303  Q
    |||||||||||||||||||||||||||   |||||||||| |||||||| |||||||    
T  912995 ataagtacttatatgataagtgtttatagtataagcatttaattaagttgtttatcc 913051  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 31688125 - 31688064
Alignment:
Q  107 ttatagaaactgcttatgacgtgtctctaagccgttttcaacgtattttcataagctgtaca 168  Q
    |||||||||| ||||||||| ||||| |||||  |||||||| |||||||||||||| ||||    
T  31688125 ttatagaaacagcttatgacttgtctataagctattttcaacttattttcataagctctaca 31688064  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 280
Target Start/End: Original strand, 6738533 - 6738568
Alignment:
Q  245 acataagtacttatatgataagtgtttatgcaataa 280  Q
    ||||||||||||||||||||||||||||||| ||||    
T  6738533 acataagtacttatatgataagtgtttatgctataa 6738568  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 16270875 - 16270816
Alignment:
Q  246 cataagtacttatatgataagtgtttatgcaataagcatttcattaagttatttatccaa 305  Q
    |||||||||||||||||||||||||||||  | |||  ||| |||||| |||||||||||    
T  16270875 cataagtacttatatgataagtgtttatgttacaagagtttgattaagctatttatccaa 16270816  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 7554718 - 7554668
Alignment:
Q  253 acttatatgataagtgtttatgcaataagcatttcattaagttatttatcc 303  Q
    ||||||||||||| ||||||||| ||| |||||| |||||||| |||||||    
T  7554718 acttatatgataaatgtttatgctatacgcatttgattaagttgtttatcc 7554668  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 306
Target Start/End: Complemental strand, 26516242 - 26516181
Alignment:
Q  245 acataagtacttatatgataagtgtttatgcaataagcatttcattaagttatttatccaaa 306  Q
    ||||||| |||||||||||||| | |||||| ||||||  || |||||||| ||||||||||    
T  26516242 acataagcacttatatgataagcgcttatgctataagcgcttaattaagttgtttatccaaa 26516181  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 28981942 - 28981889
Alignment:
Q  253 acttatatgataagtgtttatgcaataagcatttcattaagttatttatccaaa 306  Q
    |||||||||||||  |||||||| ||||||| || ||||||||| |||||||||    
T  28981942 acttatatgataaacgtttatgctataagcaattaattaagttacttatccaaa 28981889  T

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Target: scaffold1194 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 347 - 462
Target Start/End: Complemental strand, 237 - 122
Alignment:
Q  347 ttgatttcagtgtaattttcaacacactatttggcctttgcacaagtttttggatggctgttacgatgagattcattcttggaggtttaaatgatttgct 446  Q
    ||||||||||||| |||||||||||| ||||||||||  | ||  |||||||||||||| |||  | ||||||  |||| ||| |||||||||   ||||    
T  237 ttgatttcagtgtcattttcaacacattatttggcctcagtacgggtttttggatggctattatcacgagatttcttctcggaagtttaaatggcgtgct 138  T
Q  447 tggaccaatgaaggta 462  Q
    ||||||| | ||||||    
T  137 tggaccagttaaggta 122  T

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Target: chr7 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 203
Target Start/End: Complemental strand, 44822012 - 44821949
Alignment:
Q  140 gttttcaacgtattttcataagctgtacagaatagcttgtgaaaacagctcgtaacttatacaa 203  Q
    ||||||||| |||||||||||| | | ||||||||||| |||||||||||  ||||||||||||    
T  44822012 gttttcaacttattttcataagttctccagaatagcttatgaaaacagcttataacttatacaa 44821949  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 305
Target Start/End: Complemental strand, 24545728 - 24545675
Alignment:
Q  252 tacttatatgataagtgtttatgcaataagcatttcattaagttatttatccaa 305  Q
    |||||||||||||||||||||| |||||| |  || |||||||| |||||||||    
T  24545728 tacttatatgataagtgtttatccaataaccgcttaattaagttgtttatccaa 24545675  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 14340937 - 14340990
Alignment:
Q  253 acttatatgataagtgtttatgcaataagcatttcattaagttatttatccaaa 306  Q
    ||||||||||||||||||||||  ||||||| || |||||||| ||||||||||    
T  14340937 acttatatgataagtgtttatgttataagcacttaattaagttgtttatccaaa 14340990  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 4247218 - 4247271
Alignment:
Q  253 acttatatgataagtgtttatgcaataagcatttcattaagttatttatccaaa 306  Q
    |||||||||||||||  |||||| ||||||| || |||||||| ||||||||||    
T  4247218 acttatatgataagtacttatgctataagcacttaattaagttgtttatccaaa 4247271  T

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Target: scaffold0085 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 26175 - 26233
Alignment:
Q  253 acttatatgataagtgtttatgcaataagcatttcattaagttatttatccaaaaaggg 311  Q
    |||||||||||||||| |||||| ||||||| || |||||| | |||||||||| ||||    
T  26175 acttatatgataagtgcttatgctataagcacttaattaaggtgtttatccaaagaggg 26233  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 306
Target Start/End: Complemental strand, 24193529 - 24193468
Alignment:
Q  245 acataagtacttatatgataagtgtttatgcaataagcatttcattaagttatttatccaaa 306  Q
    |||||||||||||||||||||| |||||||| |||||   |  |||||||| ||||||||||    
T  24193529 acataagtacttatatgataagcgtttatgctataagtgctcaattaagttgtttatccaaa 24193468  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 2400100 - 2400043
Alignment:
Q  245 acataagtacttatatgataagtgtttatgcaataagcatttcattaagttatttatc 302  Q
    ||||||| ||||||||||||| ||||||||| |||| ||||| |||||| | ||||||    
T  2400100 acataagcacttatatgataattgtttatgccataaacatttaattaaggtgtttatc 2400043  T

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