View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4363-Insertion-2 (Length: 1090)

Name: NF4363-Insertion-2
Description: NF4363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4363-Insertion-2
NF4363-Insertion-2
[»] chr4 (1 HSPs)
chr4 (7-684)||(6476885-6477550)


Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 7 - 684
Target Start/End: Original strand, 6476885 - 6477550
Alignment:
Q  7 atagtatatatcgatttaagattacatctaagtaaaacctgatgaacatgttatactctaaaatgaataaaaataatttgctatatcatccacacgtggg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6476885 atagtatatatcgatttaagattacatctaagtaaaacctgatgaacatgttatactctaaaatgaataaaaataatttgctatatcatccacacgtggg 6476984  T
Q  107 ataaaaaagtaaagaaactaatcattgcctggaccatattggtcaccatatcaatataaaaagagaagaatgatcatnnnnnnnnnnnnnnnnnnnntca 206  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||                    |||    
T  6476985 ataaaaaagtaaagaaactaatcactgcctggaccatattggtcaccatatcaatataaaaagagaagaatgatcataaaaaaaaaaaaa-------tca 6477077  T
Q  207 tatattaataaaataaactgtgtgaaatagacctgacaggttccggtataaagtaggttagcagaaatctaaaaatttaaaggccagctagaaactttag 306  Q
    ||||||||||| |||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  6477078 tatattaataagataaactgtgtgaaatagacatgacaagttctggtataaagtaggttagcagaaatcttaaaatttaaaggccagctagaaattttag 6477177  T
Q  307 tactnnnnnnnnnnnnnnnnccattgtttgtaacctacgaaagttcaataaacatcactaatgcatgtacgtttgttagataaatataaaaccagtaggt 406  Q
    ||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6477178 tactaaaacaaaaaag-----cattgtttgtaacctacgaaagttcaataaacatcactaatgcatgtacgtttgttagataaatataaaaccagtaggt 6477272  T
Q  407 tattcggatatacatttgaaaaaagttacaaccgattaatgttgtcttacagattcaatttgtgacaaatagttcaaactgaactagagagagctcataa 506  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6477273 tattctgatatacatttgaaaaaagttacatacgattaatgttgtcttacagattcaatttgtgacaaatagttcaaactgaactagagagagctcataa 6477372  T
Q  507 acatggatattttctaaaggaaaaaagtggnnnnnnnnnnnnnnnnnnnnnnnnaagaaaaatgaacaatagagaaattgcttactggcgtgtctgccat 606  Q
    ||||||||||||||||||||||||||||||                        ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  6477373 acatggatattttctaaaggaaaaaagtggtttctttttctttatttcctttttaagaaaaatgaactatagagaaatttcttactggcgtgtctgccat 6477472  T
Q  607 aggaacattaagagcttccatggtgccacatagatatccatgctcaaggtcacatccttgtatacggacatttaccct 684  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6477473 aggaacattaagagcttccatggtgccacatagatatccatgctcaaggtcacatccttgtatacggacatttaccct 6477550  T

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