View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4363-Insertion-3 (Length: 618)
Name: NF4363-Insertion-3
Description: NF4363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4363-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 51 - 553
Target Start/End: Complemental strand, 14212999 - 14212497
Alignment:
| Q |
51 |
tataattttagataagattgtattactcaacatagcttacatgtcttttgtgccatttgagaaacaattgaaacatcacaaacaatcatgaaatgaaact |
150 |
Q |
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| T |
14212999 |
tataattttagataagattgtattactcaacatagcttacatgtcttttgtgccatttgagaaacaattgaaacatcacaaacaatcatgaaatgaaaca |
14212900 |
T |
|
| Q |
151 |
atggaagtatatcatttttatttttaagttgaatccacacaaaacacaagtgtctagagacaagaatctagtcatcaattgcataatgagtaaggttgat |
250 |
Q |
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| T |
14212899 |
gtggaagtatatcatctttatttttaagttgaatccacacaaaacacaagtgtctagagacaagaatctagtcatcaattgcataatgagtaaggttgat |
14212800 |
T |
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| Q |
251 |
tatatcctctggcctagaaggtggatgtgtcttgttcctcattcttagctcttgatactccttataaaggaatcctctatactttggtgattccccaatc |
350 |
Q |
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| T |
14212799 |
tatatcctctggcctagaaggtggatgtgtcttgttcctcattcttagctcttgatactccttataaaggaatcctctatactttggtgattccccaatc |
14212700 |
T |
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| Q |
351 |
tctttggtgaattgtggtaatggttcaacccatttctgtccatttaagttatggaagaacacaaatgagtaccggcttctttctccttttcttacaactc |
450 |
Q |
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| T |
14212699 |
tctttggtgaattgtggtaatggttcaacccatttctctccatttaagttatggaagaacgcaaatgagtaccggcttttttctccttttcttacaactc |
14212600 |
T |
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| Q |
451 |
tatgatttgcactcttgaactttttgttactcaagaccttcaaaatgacaacaccactaatgagagtgtgatacaaaaatacatccaagtgtttgaggac |
550 |
Q |
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| T |
14212599 |
tatgagatgcactcttgaactttttgttactcaagaccttcaaaatgacaacaccactaatgagagtgtgatacaaaaatacatccaagtgtttgaggac |
14212500 |
T |
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| Q |
551 |
atc |
553 |
Q |
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| T |
14212499 |
atc |
14212497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 7 - 412
Target Start/End: Complemental strand, 14218012 - 14217604
Alignment:
| Q |
7 |
aaacataatatatgtaaggtttgaggttgaaacaaaaaagaca----atataattttagataagattgtattactcaacatagcttacatgtcttttgtg |
102 |
Q |
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| T |
14218012 |
aaacataatatatgtaaagtttgaggttcaaacaaaaaagacagacaatataattttagataagattgtattactcaacatagcttacatgtcttttgtg |
14217913 |
T |
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| Q |
103 |
ccatttgagaaacaattgaaacatcacaaacaatcatgaaatgaaactatggaagtatatcatttttatttttaagttgaatccacacaaaacacaagtg |
202 |
Q |
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| T |
14217912 |
acatttgagaaacaattgaaacatcacaaacaatcatgaaatgaaacagtggaagtatataattttaatttt-aagttgaatccacacaaaacacaagtg |
14217814 |
T |
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| Q |
203 |
tctagagacaagaatctagtcatcaattgcataatgagtaaggttgattatatcctctggcctagaaggtggatgtgtcttgttcctcattcttagctct |
302 |
Q |
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| T |
14217813 |
tctagagacaagaatctagttatcaattgcataatgagtaaggttgattatatcctctggcctagaaggtggatgtgtcttgttcctcattcttagctct |
14217714 |
T |
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| Q |
303 |
tgatactccttataaaggaatcctctatactttggtgattccccaatctctttggtgaattgtggtaatggttcaacccatttctgtccatttaagttat |
402 |
Q |
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| T |
14217713 |
tgatactccttataaaggaatcctctatactttggtgattccccaatctctttggtgaattgtggtaatggttcaacccatttctctccatttaagttat |
14217614 |
T |
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| Q |
403 |
ggaagaacac |
412 |
Q |
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| T |
14217613 |
ggaagaacac |
14217604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 446 - 615
Target Start/End: Complemental strand, 14222961 - 14222792
Alignment:
| Q |
446 |
aactctatgatttgcactcttgaactttttgttactcaagaccttcaaaatgacaacaccactaatgagagtgtgatacaaaaatacatccaagtgtttg |
545 |
Q |
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| T |
14222961 |
aactctatgagatgcactcttgaactttttgttactcaagaccttcaaaatgacaacaccactaatgagagtgtgatacaaaaatacatccaagtatttg |
14222862 |
T |
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| Q |
546 |
aggacatccaacacaaacaattgaatgggggcatgccaacattccatatgtagttgcacgatctaacaag |
615 |
Q |
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| T |
14222861 |
gggacatctaacacaaacaattgaataggggcatgccaacattccatatgtagttacaccatctaacaag |
14222792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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