View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4363_low_1 (Length: 473)
Name: NF4363_low_1
Description: NF4363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4363_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 6e-75; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 313 - 463
Target Start/End: Original strand, 26326418 - 26326568
Alignment:
| Q |
313 |
tatcagtttttctgggcaaggccttggtgaaataaagaacttcctggatgagtattgtattgcacgtaattcagcagggtactttcttatacaagattca |
412 |
Q |
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| T |
26326418 |
tatcagtttttctgggcaaggccttggtgaaataaagaacttcctggatgagtattgtattgcacgtaattctgcagggtactttcttatacaagactca |
26326517 |
T |
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| Q |
413 |
atgtctacgtattatgagactctttgcaccggatatgattggattgatgat |
463 |
Q |
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| T |
26326518 |
atgtctacgtattatgagactctttgcaccggatatgattggattgatgat |
26326568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 123 - 250
Target Start/End: Original strand, 26326229 - 26326356
Alignment:
| Q |
123 |
gaaaatcttgagattcatggaagcttggagttgattacacatgcaattcaccatgtgacacctgttaatggaggcccaacatttgatcgaatgattgagt |
222 |
Q |
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| T |
26326229 |
gaaaatcttgagattcatggaagcttggagttgattacacatgcaattcaccatgtaacacctgttaatggaggcccaacatttgatcgaatgattgagt |
26326328 |
T |
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| Q |
223 |
acgttccaagtcatagtgtaatattaca |
250 |
Q |
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| T |
26326329 |
acgttccaagtcatagtgtaatattaca |
26326356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 26326107 - 26326172
Alignment:
| Q |
1 |
tattcactctaatggttagtttttaatcatatatatgtccaaaattaatcactacaagaaaaccag |
66 |
Q |
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| T |
26326107 |
tattcactctaatggttagtttttaatcatatatatgtccaaaattaatcactacaagaaaaccag |
26326172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 123 - 239
Target Start/End: Complemental strand, 48319733 - 48319617
Alignment:
| Q |
123 |
gaaaatcttgagattcatggaagcttggagttgattacacatgcaattcaccatgtgacacctgttaatggaggcccaacatttgatcgaatgattgagt |
222 |
Q |
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| T |
48319733 |
gaaaagcttgagattcatggaaggttggcgttgattacacatgcaattcaccatcagatacctgttaatggggccccatcagtttatcaaatgattgagt |
48319634 |
T |
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| Q |
223 |
acgttccaagtcatagt |
239 |
Q |
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| T |
48319633 |
atgttccaagtcttagt |
48319617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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